View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_low_13 (Length: 381)
Name: NF3788_low_13
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 3543110 - 3542747
Alignment:
| Q |
1 |
taaagaactgcaaacattaatttacatacagttgctttgacatcctttgatgtcaagattttggttaggttttccttggcttttatgagctgagcttgca |
100 |
Q |
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| T |
3543110 |
taaagaactgcaaacattaatttacatacagttgctttgacatcctttgatgtcaagattttggttaggttttccttggcttttatgagctgagcttgca |
3543011 |
T |
|
| Q |
101 |
tcttatcataggcagctgcataagcaaatgggagcaa-ccgagcaaggagtaagcttgcattatagtagtagtttctagacaagtatttatttctcgttc |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543010 |
tcttatcataggcatctgcataagcaaatgggagcaaaccgagcaaggagtaagcttgcattatagtagtagtttctagacaagtatttatttctcgttc |
3542911 |
T |
|
| Q |
200 |
agattgaccaattgatcaaatcgccaatttagtccttgaaatggtatggtgctgacaatttaatccttcaaattattaatatatcaaaacagtcctggat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542910 |
agattgaccaattgatcaaatcgccaatttagtccttgaaatggtatggtgttgacaatttaatccttcaaattattaatatatcaaaacagtcctggat |
3542811 |
T |
|
| Q |
300 |
attgaaaatcactaatcatgattctttccaactcggtcaatttagaccatgaaatagtctgaac |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542810 |
attgaaaatcactaatcatgattctttccaactcggtcaatttagaccatgaaatagtctgaac |
3542747 |
T |
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