View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788_low_2 (Length: 633)

Name: NF3788_low_2
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788_low_2
NF3788_low_2
[»] chr5 (5 HSPs)
chr5 (333-504)||(33111025-33111196)
chr5 (73-203)||(33111325-33111455)
chr5 (73-192)||(18858737-18858847)
chr5 (570-615)||(33110914-33110959)
chr5 (103-141)||(18861687-18861725)
[»] chr1 (3 HSPs)
chr1 (73-192)||(24316923-24317035)
chr1 (150-192)||(24321069-24321111)
chr1 (103-141)||(24321042-24321080)
[»] chr7 (4 HSPs)
chr7 (73-192)||(15899214-15899324)
chr7 (73-192)||(39011447-39011557)
chr7 (103-192)||(15894751-15894838)
chr7 (150-192)||(39011645-39011687)
[»] chr2 (3 HSPs)
chr2 (73-192)||(2201653-2201764)
chr2 (150-192)||(2206197-2206239)
chr2 (103-141)||(2206170-2206208)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 333 - 504
Target Start/End: Complemental strand, 33111196 - 33111025
Alignment:
Q  333 tatgttgttttttatatagaaatggagatgattccgatgaggcaaagnnnnnnnncatttgtttcttggcagtttagatgaaaataatggaaatgaagaa 432  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  33111196 tatgttgttttttatatagaaatggagatgattccgatgagtcaaagaaaaaaaacatttgtttcttggcagtttagatgaaaataatggaaatgaagaa 33111097  T
Q  433 gagtaagtacctgaagccatgtctttgaaatcatctctgatatataatagcgccccagatatgactcctaca 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33111096 gagtaagtacctgaagccatgtctttgaaatcatctctgatatataatagcgccccagatatgactcctaca 33111025  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 33111455 - 33111325
Alignment:
Q  73 ttagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtcacatgactcacttaagtg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33111455 ttagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatggcacatgacattgtcatatgtcacatgactcacttaagtg 33111356  T
Q  173 ataatttaatctcagtcatttaatctgaagg 203  Q
    ||||||||||||||  |||||||||||||||    
T  33111355 ataatttaatctcaaccatttaatctgaagg 33111325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 18858847 - 18858737
Alignment:
Q  73 ttagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtcacatgactcacttaagtg 172  Q
    |||||||||||||||||||||||||||||||||||||||  |||  || ||||||||||| ||||||||||       |||||||||||| |||||||||    
T  18858847 ttagggcgggagttatttctgattgtggaggagagagaa--ttgttttggaatgagaatggcacatgacat-------tgtcacatgactgacttaagtg 18858757  T
Q  173 ataatttaatctcagtcatt 192  Q
    ||||||||||||||| ||||    
T  18858756 ataatttaatctcagccatt 18858737  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 570 - 615
Target Start/End: Complemental strand, 33110959 - 33110914
Alignment:
Q  570 gaagtaactaactagtgtcataaccaaagagaaggccaccaatacc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33110959 gaagtaactaactagtgtcataaccaaagagaaggccaccaatacc 33110914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 18861687 - 18861725
Alignment:
Q  103 gagagagaaagttgaatttgaatgagaatgacacatgac 141  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  18861687 gagagagaaagttgaattggaatgagaatggcacatgac 18861725  T

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Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 24317035 - 24316923
Alignment:
Q  73 ttagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtcacatgactcacttaagtg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||       | ||||||||||||||||||||    
T  24317035 ttagggcgggagttatttctgattgtggaggagagagaaagttgaattggaatgagaatggcacatgacat-------tatcacatgactcacttaagtg 24316943  T
Q  173 ataatttaatctcagtcatt 192  Q
    ||||||||||||||| ||||    
T  24316942 ataatttaatctcagccatt 24316923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 24321069 - 24321111
Alignment:
Q  150 atgtcacatgactcacttaagtgataatttaatctcagtcatt 192  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  24321069 atgtcacatgactcacttaagtgataatttaatctcagccatt 24321111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 24321042 - 24321080
Alignment:
Q  103 gagagagaaagttgaatttgaatgagaatgacacatgac 141  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  24321042 gagagagaaagttgaattggaatgagaatgtcacatgac 24321080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 15899214 - 15899324
Alignment:
Q  73 ttagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtcacatgactcacttaagtg 172  Q
    |||||||||||||||||||||||||||||||||||||||  |||  || ||||||||||| ||||||||||       ||||||||||||||||||||||    
T  15899214 ttagggcgggagttatttctgattgtggaggagagagaa--ttgttttggaatgagaatggcacatgacat-------tgtcacatgactcacttaagtg 15899304  T
Q  173 ataatttaatctcagtcatt 192  Q
    ||||||||||||||| ||||    
T  15899305 ataatttaatctcagccatt 15899324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 39011447 - 39011557
Alignment:
Q  73 ttagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtcacatgactcacttaagtg 172  Q
    |||||||||||||||||||||||| ||||||||||| ||  |||  || || |||||||||||||||||||       ||||||| ||||||||||||||    
T  39011447 ttagggcgggagttatttctgattatggaggagagataa--ttgttttggattgagaatgacacatgacat-------tgtcacacgactcacttaagtg 39011537  T
Q  173 ataatttaatctcagtcatt 192  Q
    ||||||||||||||| ||||    
T  39011538 ataatttaatctcagccatt 39011557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 15894838 - 15894751
Alignment:
Q  103 gagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtcacatgactcacttaagtgataatttaatctcagtcatt 192  Q
    |||||||||||||||||| ||||||||||| |||||||| |||  | ||| ||||||||| |||||||||||||||||||||||| ||||    
T  15894838 gagagagaaagttgaattggaatgagaatggcacatgac-ttgaga-atgacacatgactaacttaagtgataatttaatctcagccatt 15894751  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 39011687 - 39011645
Alignment:
Q  150 atgtcacatgactcacttaagtgataatttaatctcagtcatt 192  Q
    |||||||  ||||||||||||||||||||||||||||| ||||    
T  39011687 atgtcacgggactcacttaagtgataatttaatctcagccatt 39011645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 2201764 - 2201653
Alignment:
Q  73 ttagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaa-tgacacatgacattgtcatatgtcacatgactcacttaagt 171  Q
    |||||||||||||||||||||||||||||||||||||||  |||  || ||||||||| || ||||||||||       |||||||||||||||||||||    
T  2201764 ttagggcgggagttatttctgattgtggaggagagagaa--ttgttttggaatgagaattggcacatgacat-------tgtcacatgactcacttaagt 2201674  T
Q  172 gataatttaatctcagtcatt 192  Q
    |||||||||||||||| ||||    
T  2201673 gataatttaatctcagccatt 2201653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 2206197 - 2206239
Alignment:
Q  150 atgtcacatgactcacttaagtgataatttaatctcagtcatt 192  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  2206197 atgtcacatgactcacttaagtgataatttaatctcagccatt 2206239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 2206170 - 2206208
Alignment:
Q  103 gagagagaaagttgaatttgaatgagaatgacacatgac 141  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  2206170 gagagagaaagttgaattggaatgagaatgtcacatgac 2206208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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