View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_low_3 (Length: 570)
Name: NF3788_low_3
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 15 - 562
Target Start/End: Complemental strand, 49300074 - 49299498
Alignment:
| Q |
15 |
aacacaactactaatgatcacgataaagtagtgcatagcatatttttccgcgcaagtttttatcattacaatgagtatgtactatgtagaactctgaaag |
114 |
Q |
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| T |
49300074 |
aacacaactactaatgatcacgataaagtagtgcatagcatatttttccgcgcaagtttttatcattacaatgagtatgtactatgtagaactctgaaag |
49299975 |
T |
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| Q |
115 |
catgcaaatgaatgctagcccactcagtcacccc---------------tagtttggctatcgtatattgcaagaaaaagaaaattatatctcatcaaag |
199 |
Q |
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| T |
49299974 |
catgcaaatgaatgctagcccactcagtcaccccaaggaagcccacccctagtttggctatcgtatattgcaagaaaaagaaaattatatctcatcaaag |
49299875 |
T |
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| Q |
200 |
tgtgatagtaactgtgacttataagcaaagctctgaacaagctttccacgctttgatgtttgatattatttcccatattaatagcagaaaaatacgagtg |
299 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49299874 |
tgcgatagtaactgtgacttataagcaaagctctgaataagcttttcacgctttgatgtttgatattatttcccatattaatagcagaaaaatacgagtg |
49299775 |
T |
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| Q |
300 |
tac-------tactatacttctttggaccacgtttttctattctccaattttgacgtattcatgaattaa-------gtgtattcgttggattgagatcg |
385 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49299774 |
tactactgtctactatacttctttggaccacgtttttctattctccaattttgacgtattcatgaattaagtgtattgtgtattcgttggattgagatcg |
49299675 |
T |
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| Q |
386 |
acacgactcaaattttaaactgtgtannnnnnnnnnnnaaaaaggttaaaatttatatttaagtctaaacaatccaatttctattcaacaattacaaatg |
485 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49299674 |
acacgactcaaattttaaactgtgtattttttatttttaaaaaggttaaaatttatatttaagtctaaacaatccaatttctattcaacaattacaaatg |
49299575 |
T |
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| Q |
486 |
tactaaatgtaaaaatgaatcaaaattttaacagagcaaaatctcatttaatacttcctctagtgttcattcttctc |
562 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49299574 |
tactaaatgtaaaaataaatcaaaattttaacagagcaaaatctcatttaatacttcctctagtgttcattcttctc |
49299498 |
T |
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