View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_low_6 (Length: 447)
Name: NF3788_low_6
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 17435895 - 17436316
Alignment:
| Q |
10 |
catcatcatagctaaaggtcaagtaccaagtcaaacatcaacattggtgttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccagtt |
109 |
Q |
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| T |
17435895 |
catcatcataactaacggtcaagcaccaaatcaaacatcaacattggtgttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccggtt |
17435994 |
T |
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| Q |
110 |
atcggcatcaacggaagggtttggtcttaccactcattcggaacaatatttgtcgttgatgaccccgtcatgttaagccctagtccattttcaagtcaaa |
209 |
Q |
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| T |
17435995 |
atcggcatcaacggaagggtttggtcttaccactcattcggaacaatatttgtcgttgatgaccccgtcatgttaagccctagtccattttcaactcaaa |
17436094 |
T |
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| Q |
210 |
ttggaagggcacaaggtgtaattacagtgacatctctagatggtgcaaatgtgaacatagttttgtcacttgcgttcaacaatggggaatatagtggtag |
309 |
Q |
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| T |
17436095 |
ttggaagggcacaaggtgtaattacagtgacatctctagatggtgcaaatgtgaacatagttttgtcacttgtgttcaacaatggggaatatagtggtag |
17436194 |
T |
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| Q |
310 |
cactttggagattcaaggtaatagtcgtcaacgtgagaattcaagagagctatctgttgtttctggaacaggaaggtttcgatatgcaagagggtttgtt |
409 |
Q |
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| T |
17436195 |
cactttggagatacaaggtaatagtcgtcaacgtgagaattcaagagagctctctgttgtttctggaacaggaaggtttcgatatgcaagagggtttgtt |
17436294 |
T |
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| Q |
410 |
gtgtttgaaactatgtcttatg |
431 |
Q |
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| T |
17436295 |
gtgtttgaaactatgtcttatg |
17436316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 431
Target Start/End: Original strand, 17432058 - 17432443
Alignment:
| Q |
46 |
atcaacattggtgttctacctacaagatgtgggaagaggattcaacgcaaccgttatgccagttatcggcatcaacggaagggtttggtcttaccactca |
145 |
Q |
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| T |
17432058 |
atcaaccttggtgttcttcctacaagatgtcggaaaaggagttggcgcaaccgttcaaccagttatcggcatcaatggaaaggtttggtcctacaactca |
17432157 |
T |
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| Q |
146 |
ttcggaacaatatttgtcgttgatgaccccgtcatgttaagccctagtccattttcaagtcaaattggaagggcacaaggtgtaattacagtgacatctc |
245 |
Q |
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| T |
17432158 |
tttggaacaatatttgtagtcgatgaccctattatgttaaaccctaatccaggttcaactcaaatcggaagggctcaaggtatgattacagtaacatctc |
17432257 |
T |
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| Q |
246 |
tagatggtgcaaatgtgaacatagttttgtcacttgcgttcaacaatggggaatatagtggtagcactttggagattcaaggtaatagtcgtcaacgtga |
345 |
Q |
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| T |
17432258 |
ttgatggttcaaatgtgagcatagttttgtcacttgtgttcaacaatgggcaatatagtggtagcactttggagattcaaggtgctagtcgacaacgcga |
17432357 |
T |
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| Q |
346 |
gaattcaagagagctatctgttgtttctggaacaggaaggtttcgatatgcaagagggtttgttgtgtttgaaactatgtcttatg |
431 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |
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| T |
17432358 |
aaattcaagagagctttctgttgtttccggaacaggaaggtttcgatatgcaagaggatttgttgtgtttgaaactgtatcttatg |
17432443 |
T |
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