View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3788_low_7 (Length: 443)
Name: NF3788_low_7
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3788_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 29630733 - 29630316
Alignment:
| Q |
10 |
caatgagataggaagaccaaaatgttggaattctgtactggcagttgataggtaatttaatattttctttctaagttgaaggttcatgttaaattcaatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29630733 |
caatgagataggaagaccaaaatgttggaattctgtactggcagttgataggtaatttaatattttctttctaagttgaaggttcatgttaaattcaatt |
29630634 |
T |
|
| Q |
110 |
caaggaaggcaaagccaaatgagagtaaagaaatctggtttttgatatagtaaatgatatttaagaaaattaaatttctattagttataagcattgatat |
209 |
Q |
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| T |
29630633 |
caaggaaggcaaagccaaatgagattaaagaaatctggtttttgatatagtaaatgatatttaagaaaattaaatttctattagttataagcattgatat |
29630534 |
T |
|
| Q |
210 |
tgatacttcattattgctcttgttagtatacatgtgtttaattctaattgtcaaatgcaggtgatgattgaaggacgataacctgagttgcactctgcaa |
309 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29630533 |
tgatacttcattattgctcttgttagcatacatgtgtttaattctaattgtcaaatgcaggtgatgattgaaggacgataacctgagttgcactcagcaa |
29630434 |
T |
|
| Q |
310 |
ttatatttgaactctgcacaattagaccttaaacctgactttgatgataccatattaaatgggtttggattgatttgattccaaaagttagttcaaaaga |
409 |
Q |
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| T |
29630433 |
ttatatttgaactctgcacaattagaccttaaacctgactttgatgataccatattaaatgggtttggattgatttgattccaaaagttagttcaaaaga |
29630334 |
T |
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| Q |
410 |
tgaacgtatccaacctac |
427 |
Q |
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| T |
29630333 |
tgaacgtatccaacctac |
29630316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 29649964 - 29649619
Alignment:
| Q |
10 |
caatgagataggaagaccaaaatgttggaattctgtactggcagttgataggtaatttaatattttctttctaagttgaaggttcatgttaaattcaatt |
109 |
Q |
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|||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||| |
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| T |
29649964 |
caatgagataggaagaccaaaatgttaaaattctgcactagcagttgataggtaatttaaggttttctttttatgttgaaggttcatgttaaactcaatt |
29649865 |
T |
|
| Q |
110 |
caaggaaggcaaagccaaatgagagtaaagaaatctggtttttgatatagtaaatgatatttaagaaaattaaatttctattagttataagcattgatat |
209 |
Q |
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|||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
29649864 |
caaggaaggcaaagccaaatgagatttaagaaaactggtttttgatata-taaatgatatttaagaaaataaaatttctattggttataagcattgatat |
29649766 |
T |
|
| Q |
210 |
tgatacttcattattgctcttgttagtatacatgtgtttaattctaattgtcaaatgcaggtgatgattgaaggacgataacctgagttgcactctgcaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||| ||||| ||| |
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| T |
29649765 |
tgatacttcattattgctcttgttagtatacatg---------------------tgcagctgatgattgaaggacgatcacttgagttggactctacaa |
29649687 |
T |
|
| Q |
310 |
ttatatttgaactctgcacaa-ttagaccttaaacctgactttgatgataccatattaaatgggtttg |
376 |
Q |
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|||||||| ||||||||||| |||| ||||||||| || |||||||||| |||||||||||||||| |
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| T |
29649686 |
ctatatttggactctgcacaatttagtccttaaacccgaagttgatgatactatattaaatgggtttg |
29649619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 26776861 - 26776827
Alignment:
| Q |
218 |
cattattgctcttgttagtatacatgtgtttaatt |
252 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
26776861 |
cattactgctcttgttagtatacatgtgtttaatt |
26776827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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