View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3788_low_9 (Length: 409)

Name: NF3788_low_9
Description: NF3788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3788_low_9
NF3788_low_9
[»] chr1 (1 HSPs)
chr1 (112-409)||(50409569-50409866)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 112 - 409
Target Start/End: Complemental strand, 50409866 - 50409569
Alignment:
Q  112 cctaacatttctagcgagatcaacaaatgaaggaatagagagaatgtaccgtcgctgaaatcgctgaactcgctgtcatcgctatcgacgtcagcggctt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50409866 cctaacatttctagcgagatcaacaaatgaaggaatagagagaatgtaccgtcgctgaaatcgctgaactcgctgtcatcgctatcgacgtcagcggctt 50409767  T
Q  212 cgtcttcgaagaactgaacgactcctcgattcttccgtttgccggtcttgtcgtcatcgaagttgttcttccgtttgccggaggaaccttttccggcggg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50409766 cgtcttcgaagaactgaacgactcctcgattcttccgtttgccggtcttgtcgtcatcgaagttgttcttccgtttgccggaggaaccttttccggcggg 50409667  T
Q  312 agctttacccttgaaggcgggagctttgcccttgttcgtcatttccggtgaattgaaaccaatgcgaattgcatgcacagagagaaaaaggaggtgaa 409  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50409666 agctttacccttgacggcgggagctttgcccttgttcgtcatttccggtgaattgaaaccaatgcgaattgcatgcacagagagaaaaaggaggtgaa 50409569  T

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