View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3789_high_2 (Length: 330)

Name: NF3789_high_2
Description: NF3789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3789_high_2
NF3789_high_2
[»] chr7 (6 HSPs)
chr7 (19-137)||(28181007-28181120)
chr7 (234-313)||(28181136-28181215)
chr7 (23-92)||(30165682-30165751)
chr7 (19-90)||(30131080-30131151)
chr7 (22-90)||(30120083-30120151)
chr7 (23-90)||(30125130-30125197)
[»] chr8 (2 HSPs)
chr8 (22-92)||(43164853-43164923)
chr8 (19-92)||(41311172-41311245)
[»] chr2 (2 HSPs)
chr2 (22-90)||(21426605-21426673)
chr2 (106-162)||(21425959-21426015)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 28181007 - 28181120
Alignment:
Q  19 tcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatagaatagaatagaaccattcaccggcaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  28181007 tcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaat-----gaatagaatagaaccattcaccggcaacc 28181101  T
Q  119 tcaacatgatttcctttat 137  Q
    |||||||||||||||||||    
T  28181102 tcaacatgatttcctttat 28181120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 28181136 - 28181215
Alignment:
Q  234 ggccactgccttgctcagttattcaatgcatgatctcttttccaagagtaagtggttaatattttcattttttccgatgc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28181136 ggccgctgccttgctcagttattcaatgcatgatctcttttccaagagtaagtagttaatattttcattttttccgatgc 28181215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 30165751 - 30165682
Alignment:
Q  23 ttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatagaa 92  Q
    |||||||||||||||||||||||||||| | ||||  |||| ||||||||||||||||||||||||||||    
T  30165751 ttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaatgaatagaa 30165682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 30131080 - 30131151
Alignment:
Q  19 tcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatag 90  Q
    ||||||||||||||| |||||| ||||||||| |  || | |||||||||||||||||||||||||||||||    
T  30131080 tcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatag 30131151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 30120083 - 30120151
Alignment:
Q  22 tttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatag 90  Q
    |||||||||||||||||||||||||||||   || |||||||||| ||||| ||||| |||||||||||    
T  30120083 tttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatag 30120151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 30125130 - 30125197
Alignment:
Q  23 ttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatag 90  Q
    |||||||||||||||||||| ||||||| |  | |||||||||| ||||| |||||||||||||||||    
T  30125130 ttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaaccagccaatgaatag 30125197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 43164853 - 43164923
Alignment:
Q  22 tttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatagaa 92  Q
    |||||||||||||| |||||||||||||| | ||||  |||||||||||||||||||||||||||||||||    
T  43164853 tttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaa 43164923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 41311172 - 41311245
Alignment:
Q  19 tcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatagaa 92  Q
    |||||||||||||||||||||||||||||||| | ||||  |||| || || ||||||||||||||||||||||    
T  41311172 tcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaaccagccaatgaatagaa 41311245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 21426673 - 21426605
Alignment:
Q  22 tttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatag 90  Q
    ||||||||||||||| ||||||||||||| |    ||||||||| |||||| |||||||||||||||||    
T  21426673 tttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatag 21426605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 21426015 - 21425959
Alignment:
Q  106 ttcaccggcaacctcaacatgatttcctttatcacctcttggggaagatacacgctc 162  Q
    ||||||||||||||||  | ||||||||||||||| ||||  || ||||||||||||    
T  21426015 ttcaccggcaacctcagaaggatttcctttatcacttcttcaggcagatacacgctc 21425959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University