View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3789_high_3 (Length: 237)
Name: NF3789_high_3
Description: NF3789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3789_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 21283283 - 21283088
Alignment:
| Q |
16 |
atttagtccgtggtatacttagcacaaaaataagaaaaggaccaacatttgtttgtgcacttgcctatttggttaatttaaatcacaatcataagaagag |
115 |
Q |
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| T |
21283283 |
atttagtccgtggtacacttagcacaaaaataagaaaaggaccaacatttgtttgtgcacttgcctatttggttaatttaaatcacaatcataagaagag |
21283184 |
T |
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| Q |
116 |
aatataaaaaatcatgactattttggtgtttcttttcttaaattatttgaaaactttatggaagagggccatctctatataactgtgtttcttttc |
211 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21283183 |
aatataaaaaatcatgactattttagtgtttcttttcttaaattatttgaaaactttatggaagagggccatctctatataaccgtgtttcttttc |
21283088 |
T |
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