View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3789_low_1 (Length: 516)
Name: NF3789_low_1
Description: NF3789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3789_low_1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 36892217 - 36892365
Alignment:
| Q |
15 |
agaagcacctatggagtagtcagctgttgaaggcattgatgaaaagaccttatgcagcattcacgggaagtggtggtcgacctactgatagggaaattga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36892217 |
agaagcacctatggagtagtcagctgttgaaggcattgatgaaaagaccttatgcagcattcacgggaagtggtggtcgaccttctgatagggaaattga |
36892316 |
T |
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| Q |
115 |
ttctgacatgtataatgtttttccccaatggaaacaaggtatatatata |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892317 |
ttctgacatgtataatgtttttccccaatggaaacaaggtatatatata |
36892365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 314 - 401
Target Start/End: Original strand, 36892387 - 36892474
Alignment:
| Q |
314 |
attatataatgttataactagggttgtttgaaatttaattaggatcggttttgaagtacaaggcattcgatacaatgattaaaataaa |
401 |
Q |
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| T |
36892387 |
attatataatgttataactagggttgtttgaaatttaattaggatcggttttgaagtacaaggcattcgatacaatgattaaaataaa |
36892474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 4246469 - 4246375
Alignment:
| Q |
411 |
tatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctaccttt |
505 |
Q |
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| T |
4246469 |
tatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagtttttgccgttttccatttcacagttattactctctaccttt |
4246375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 36880375 - 36880496
Alignment:
| Q |
15 |
agaagcacctatggagtagtcagctgttgaaggcattgatgaaaagaccttatgcagcattcacgggaagtggtggtcgacctactgatagggaaattga |
114 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||| |||||| ||||||||| |
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| T |
36880375 |
agaagcacacatggagtagtcagctgttgaaggtattgatgaaaagaccttatgcagcattcaccggtgccggtggtcaaccacctgatacggaaattga |
36880474 |
T |
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| Q |
115 |
ttctgacatgtataatgttttt |
136 |
Q |
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| T |
36880475 |
tcctaacattattaatgttttt |
36880496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 10305200 - 10305310
Alignment:
| Q |
395 |
aaataaagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattac |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10305200 |
aaataaagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattac |
10305299 |
T |
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| Q |
495 |
tctctaccttt |
505 |
Q |
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||||||||||| |
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| T |
10305300 |
tctctaccttt |
10305310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 51005027 - 51005132
Alignment:
| Q |
400 |
aagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctct |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51005027 |
aagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccattttccatttcacagttattactctct |
51005126 |
T |
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| Q |
500 |
accttt |
505 |
Q |
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|||||| |
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| T |
51005127 |
accttt |
51005132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 402 - 505
Target Start/End: Complemental strand, 4251648 - 4251545
Alignment:
| Q |
402 |
gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctac |
501 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251648 |
gggctatgttatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctac |
4251549 |
T |
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| Q |
502 |
cttt |
505 |
Q |
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|||| |
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| T |
4251548 |
cttt |
4251545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 402 - 505
Target Start/End: Complemental strand, 1814390 - 1814287
Alignment:
| Q |
402 |
gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctac |
501 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1814390 |
gggctatgctatatgtagcgacagaaagtctcgctaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctttac |
1814291 |
T |
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| Q |
502 |
cttt |
505 |
Q |
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|||| |
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| T |
1814290 |
cttt |
1814287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 142817 - 142920
Alignment:
| Q |
402 |
gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctac |
501 |
Q |
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||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
142817 |
gggctatactatatgtcgcgacaaaaagtatcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctccac |
142916 |
T |
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| Q |
502 |
cttt |
505 |
Q |
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|||| |
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| T |
142917 |
cttt |
142920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 405 - 505
Target Start/End: Original strand, 13761283 - 13761383
Alignment:
| Q |
405 |
ctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctacctt |
504 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13761283 |
ctatgctatatgtagcgacaaaaagtttcgcgaatatctcacaaattatgttttataagcttttgccgttttccatttcaaagttattactctctacctt |
13761382 |
T |
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| Q |
505 |
t |
505 |
Q |
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| T |
13761383 |
t |
13761383 |
T |
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