View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3790_low_1 (Length: 1183)
Name: NF3790_low_1
Description: NF3790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3790_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 693; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 373 - 1137
Target Start/End: Original strand, 16867910 - 16868679
Alignment:
| Q |
373 |
tggaccattgataaaatgttattggtacaaattggtttgtgttgtttactatatgattcgtgtttggtatcacggtgaattgaccgaatagctgttgtga |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867910 |
tggaccattgataaaatgttattggtacaaattggtttgtgttgtttactatatgattggtgtttggtatcacggtgaattgaccgaatagctgttgtga |
16868009 |
T |
|
| Q |
473 |
ttttgcaaaaattagattttgtgtagtttttgcaaaatcaag-cgactctgcttaataatgacaaatttaatgtgatatcaaacatgtatgaaacctcca |
571 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868010 |
ttttgcaaaaattacattttgtgtagtttttgcaaaatcaaggcgactctgcttaataatgacaaatttaatgtgatatcaaacatgtatgaaacctcca |
16868109 |
T |
|
| Q |
572 |
atcacacatgtatgtaatgcacgtataatcgactacagacaatttggatccgttttgagatacagttgtaccatggtttcaaacaaatgctagagaattt |
671 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868110 |
atcacacatgtatgtaatgcaagtataatcgactgcagacaattcggatccgttttgagacacagttgtaccatggtttcaaacaaatgctagagaattt |
16868209 |
T |
|
| Q |
672 |
aatattttcattttagagagaaatgagttgtataaatttgtatgtatc----taacctggcaaccccacggtacttagaaagtcctctagaaaaaccact |
767 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868210 |
aaaattttcattttagaaagaaatgagttgtataaatttgtatgtatctatctaacctggcaaccccacggtacttagaaagtcctctagaaaaaccact |
16868309 |
T |
|
| Q |
768 |
gctttgccgccgcaaagagttcaaatactcttcttttgatgctttgtccatttcctcaaactcttttgcataagtttctatctgcaaagttcttccgcaa |
867 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16868310 |
gctttgccgccgcaaagagttcaaatactcttcttttgatgctttgtccatttcctcaaactcttttgcataagtttctatctgcaaagttcttccacaa |
16868409 |
T |
|
| Q |
868 |
attagtaacattcatttcattagaaatgtcatcaatatgttaaattaaattgtacgcggccctttaaaactaacacaaaaaatatagatgtatcttctat |
967 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868410 |
attagtaacattcatttcattagaaatgtcatcaatatgttaaattaaattgtacgcggccctttaaaactaacacaaaaaatatagatgtatcttctat |
16868509 |
T |
|
| Q |
968 |
cgacctataccaacaatgaatttgtttaagtcgtaagaaatttgagctccttaaatagatgattagaagttcgatcctgacttctacatattgaaaaaat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868510 |
cgacctataccaacaatgaatttgtttaagtggtaagaaatttaagctccttaaacagatgattagaagttcgatcctgacttctacatattgaaaaaat |
16868609 |
T |
|
| Q |
1068 |
caagttgagagaggagaacccactttttatgcctcacaaattcctcaacgatgattattcaccatcaaat |
1137 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868610 |
caagttgagagatgagaacccactttttatgcctcacaaattcctcaacgatgattattcaccatcaaat |
16868679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 16867582 - 16867872
Alignment:
| Q |
11 |
agattatacttactgtatgtgcccaaatagaggtatttgttaccacgaactcttccaatacgagcttcccatcgaccattatggtgatgcctatttataa |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
16867582 |
agattaaacttactgtatgtgcccaaatagaggtatttgttaccacgaactcttccaatacgagcttcccatcgaccattatggtgatgcctattcaaaa |
16867681 |
T |
|
| Q |
111 |
tgtaagattaatatataattagtaatagtatatacttttaatttcataaacaaaatttgtactacaagctaagataatttaactgcaaataatgacaaca |
210 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16867682 |
tgtaagattaatatctaattaataatagcatatacttttattttcataaagaaattttgtactacaaactaagataatttaactgcaaataatgacaaca |
16867781 |
T |
|
| Q |
211 |
accaagttatgtacataatactattaaagtaatgtggacacactcgtgtgtttaagaaaatggttaacacttaacttaacacccagatacttg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867782 |
accaagttatgtacataatactattaaagtaatgtgg--acactcgtgtgtttaagaaaatggttaacacttaacttaacacccagatacttg |
16867872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 713 - 853
Target Start/End: Original strand, 16857340 - 16857480
Alignment:
| Q |
713 |
atgtatctaacctggcaaccccacggtacttagaaagtcctctagaaaaaccactgctttgccgccgcaaagagttcaaatactcttcttttgatgcttt |
812 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||| ||| |||||||||||||||||| | || |
|
|
| T |
16857340 |
atgtatctaacctagcaaccccacggtacttagaaatgcctctagaaaaaccactactttggcgcctcaatgaggccaaatactcttcttttgaggactt |
16857439 |
T |
|
| Q |
813 |
gtccatttcctcaaactcttttgcataagtttctatctgca |
853 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16857440 |
ttccatttcttcatactcttttgcataagtttctatctgca |
16857480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 16856931 - 16857017
Alignment:
| Q |
19 |
cttactgtatgtgcccaaatagaggtatttgttaccacgaactcttccaatacgagcttcccatcgaccattatggtgatgcctatt |
105 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16856931 |
cttactgtatgttcccaagtagaggtacttgttaccacagactcttccaatacgagcttcccaccgaccattatggtgatgcctatt |
16857017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University