View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3791_high_10 (Length: 240)
Name: NF3791_high_10
Description: NF3791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3791_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 48674720 - 48674507
Alignment:
| Q |
13 |
atatctatatatagcaagagtagacaatcattatcaatgagaatagaaaagcctcgattgatgcgacggtgttcaaggcaattcagggagcagaaaacta |
112 |
Q |
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| T |
48674720 |
atatctatatatagcaagagtagacaatcattatcaatgagaatagaaaagcctcgattgatgcgacggtgttcaaggcaattcagggagcagaaaacta |
48674621 |
T |
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| Q |
113 |
gactgtatataatgtggaggtgcactgttttgcttctaatgtgggatgataaacttgaatattaattaaggctatagtgttgctcaatttttgttatcat |
212 |
Q |
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| T |
48674620 |
gactgtatataatgtggaggtgcactgttttgcttctaatgtgggatgataaacttgaatattaattaaggctatagtgttgctcaatttttgttatcat |
48674521 |
T |
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| Q |
213 |
gtcatgttatgtta |
226 |
Q |
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| T |
48674520 |
gtcatgttatgtta |
48674507 |
T |
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Back To:
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 7568664 - 7568718
Alignment:
| Q |
80 |
ggtgttcaaggcaattcagggagcagaaaactagactgtatataatgtggaggtg |
134 |
Q |
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| T |
7568664 |
ggtggtcaaggcaattaagggagcagaaaacaagattttatatcatgtggaggtg |
7568718 |
T |
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