View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3791_high_12 (Length: 228)
Name: NF3791_high_12
Description: NF3791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3791_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 32620268 - 32620372
Alignment:
| Q |
100 |
accgactacgaaaacataaatgaccgtatatgttacaactacattcgaaaataaattgattattctttaattatttctttcatgctttgcctcagaagca |
199 |
Q |
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| T |
32620268 |
accgactacgaaaacataaatgaccgtatatgttacaactacattcgataataaattgattattctttaattatttctttcatgctttgcctcagaagca |
32620367 |
T |
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| Q |
200 |
actac |
204 |
Q |
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||||| |
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| T |
32620368 |
actac |
32620372 |
T |
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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 32620151 - 32620246
Alignment:
| Q |
19 |
gataaatcttacttggacatgtgagagttatttctatattaaaacacctcacttgnnnnnnnaatggaatttcttagaaagaccgactacgaaaac |
114 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32620151 |
gataaatcttacttggacatgtgagaattatttctatattaaaacacctcacttgtttttttaatggaatttcttagaaagaccgactacgaaaac |
32620246 |
T |
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