View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3791_high_2 (Length: 778)
Name: NF3791_high_2
Description: NF3791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3791_high_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 11 - 601
Target Start/End: Complemental strand, 37183372 - 37182782
Alignment:
| Q |
11 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183372 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
37183273 |
T |
|
| Q |
111 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37183272 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatg |
37183173 |
T |
|
| Q |
211 |
ttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37183172 |
ttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
37183073 |
T |
|
| Q |
311 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37183072 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctcttataaggtataagg |
37182973 |
T |
|
| Q |
411 |
gaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37182972 |
gaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
37182873 |
T |
|
| Q |
511 |
agttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatacatgctata |
601 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37182872 |
agttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctata |
37182782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 11 - 601
Target Start/End: Complemental strand, 37194504 - 37193914
Alignment:
| Q |
11 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194504 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
37194405 |
T |
|
| Q |
111 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37194404 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatg |
37194305 |
T |
|
| Q |
211 |
ttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194304 |
ttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
37194205 |
T |
|
| Q |
311 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37194204 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctcttataaggtataagg |
37194105 |
T |
|
| Q |
411 |
gaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194104 |
gaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
37194005 |
T |
|
| Q |
511 |
agttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatacatgctata |
601 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37194004 |
agttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctata |
37193914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 622 - 761
Target Start/End: Complemental strand, 37182712 - 37182573
Alignment:
| Q |
622 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182712 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
37182613 |
T |
|
| Q |
722 |
ttagacagtaatcttagtgagagaagagcatgatattggt |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182612 |
ttagacagtaatcttagtgagagaagagcatgatattggt |
37182573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 622 - 761
Target Start/End: Complemental strand, 37193844 - 37193705
Alignment:
| Q |
622 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193844 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
37193745 |
T |
|
| Q |
722 |
ttagacagtaatcttagtgagagaagagcatgatattggt |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193744 |
ttagacagtaatcttagtgagagaagagcatgatattggt |
37193705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 37202427 - 37202286
Alignment:
| Q |
27 |
aatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtc |
126 |
Q |
| |
|
|||||||| | |||| |||||||||||| |||||||||| | ||||||||| |||||| || | ||||||| ||||||||||||||| ||||||||||| |
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|
| T |
37202427 |
aatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgccaaatctaaagtt |
37202328 |
T |
|
| Q |
127 |
aaacgctttctgaaatgctcagtggtagatggtttgttttag |
168 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
37202327 |
aagtgctttctgaaatgctcagtggttgatggtttgatttag |
37202286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 37180293 - 37180156
Alignment:
| Q |
24 |
agaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaa |
123 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||| || ||| ||| | |||||| || |||||||| ||||||| ||||| | ||||||| |
|
|
| T |
37180293 |
agaaatatgtgttaaagagactgcttgcaaagaaagattgaccgcagcaaagaatgagtctacctcaatatctcaaacagttcggtattgcacatctaaa |
37180194 |
T |
|
| Q |
124 |
gtcaaacgctttctgaaatgctcagtggtagatggttt |
161 |
Q |
| |
|
|||| |||||||||||| |||||||| | |||||||| |
|
|
| T |
37180193 |
gtcagtcgctttctgaaacgctcagtgatggatggttt |
37180156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 752
Target Start/End: Complemental strand, 37201650 - 37201587
Alignment:
| Q |
689 |
tatatctagataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcat |
752 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| |||| |||| |||||||||| |
|
|
| T |
37201650 |
tatatctacataccctggagagaactaatggcattacacagttttctttgtgatagaagagcat |
37201587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 37211338 - 37211303
Alignment:
| Q |
465 |
aggttcttgaagtagttgtgttgttatgctttgttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211338 |
aggttcttgaagtagttgtgttgttatgctttgttg |
37211303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 499
Target Start/End: Complemental strand, 37217086 - 37216909
Alignment:
| Q |
316 |
taaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagt---cccacgcttcctcttataaggtataaggga |
412 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||||| || |||||||| | |||| ||||| ||||| || | |||| | ||||| |
|
|
| T |
37217086 |
taaaaatgtctgcatgagatgagtggtatattttttaaaaacaaatttaccatcatgttattggagtactcccactcttccactaa--aggtgtgaggga |
37216989 |
T |
|
| Q |
413 |
agattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgtt |
499 |
Q |
| |
|
| ||| ||||||||| ||| | ||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
37216988 |
aaattaaatttctgcagaataaagtaaaaacacta---gtgagcattgag----gttcttgaagtagttgtgtttttatgctttgtt |
37216909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 374
Target Start/End: Complemental strand, 37202053 - 37201993
Alignment:
| Q |
315 |
ttaaaaatgcttgcatgagataagtggtatattta-tttaaaacaaattaacaatcatgtt |
374 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||| ||||||| |||||||| |||||||| |
|
|
| T |
37202053 |
ttaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtt |
37201993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 37211495 - 37211461
Alignment:
| Q |
268 |
ttatgcacggtgatttgaatttccatatgaatgtg |
302 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37211495 |
ttatgcatggtgatttgaatttccatatgaatgtg |
37211461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 315 - 492
Target Start/End: Complemental strand, 7527198 - 7527026
Alignment:
| Q |
315 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagggaag |
414 |
Q |
| |
|
|||| |||| ||||||||| | |||||||||||||||||||||||||||| || ||||| || |||| ||| ||||||| | |||||| | ||||| |
|
|
| T |
7527198 |
ttaataatgtttgcatgaggtgtgtggtatatttatttaaaacaaattaaccatgatgttataggagtatcactcttcctcctctaaggtgtgtgggaaa |
7527099 |
T |
|
| Q |
415 |
attgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatg |
492 |
Q |
| |
|
||| ||||||||| ||||| ||||||||| | | | |||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
7527098 |
attaaatttctgcagaacaaagtaaaaacactcta-gtgagcattg----aggttcttgaagtagttatgttcttatg |
7527026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 414835 - 414914
Alignment:
| Q |
315 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctc |
395 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| |||||||||||| || |||| || ||||||||| ||||||| |
|
|
| T |
414835 |
ttaaaaatgtttgcatgagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
414914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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