View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3791_high_5 (Length: 300)
Name: NF3791_high_5
Description: NF3791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3791_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 15194284 - 15194559
Alignment:
| Q |
19 |
atctgcggcctccgctcctcctcaacnnnnnnnngagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttataca |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15194284 |
atctgcggcctccgctcctcctcaacttttttttgagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttataca |
15194383 |
T |
|
| Q |
119 |
attttctactgaacttgtcattaacaaagaatgcatcaatctcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15194384 |
attttctactgaacttgtcattaacaaagaatgcatcaatctcactaacataattattcataggctccttccttaggacatttttacccttaaccaaagc |
15194483 |
T |
|
| Q |
219 |
caaagattgcaggcacatcttcaaatctgaagctggaatcttagttgcttgctcaatttccttgtagtataatcta |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
15194484 |
caaagattgcaggcacatcttcaaatctgaagctggaatctcagttgcttgctcaatttccttgtagcttaatcta |
15194559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 15204969 - 15205244
Alignment:
| Q |
19 |
atctgcggcctccgctcctcctcaacnnnnnnnngagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttataca |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15204969 |
atctgcggcctccgctcctcctcaactctttcttgagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttataca |
15205068 |
T |
|
| Q |
119 |
attttctactgaacttgtcattaacaaagaatgcatcaatctcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagc |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15205069 |
atttgctactgaacttgtcattaacaaagaatgcatcaatctcactaacataattattcataggctccttccgtaggacatctttacccttaaccaaagc |
15205168 |
T |
|
| Q |
219 |
caaagattgcaggcacatcttcaaatctgaagctggaatcttagttgcttgctcaatttccttgtagtataatcta |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
15205169 |
caaagattgcaggcacatcttcaaatctgaagctggaatctcagttgcttgctcaatttccttgtagcttaatcta |
15205244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 15214702 - 15214977
Alignment:
| Q |
19 |
atctgcggcctccgctcctcctcaacnnnnnnnngagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttataca |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214702 |
atctgcggcctccgctcctcctcaactatttattgagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttataca |
15214801 |
T |
|
| Q |
119 |
attttctactgaacttgtcattaacaaagaatgcatcaatctcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagc |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
15214802 |
atttactactgaacttgtcattaacaaagaatgcatcaatctcactaacataattattcataggctccttccataggacatatttacccttaaccaaagc |
15214901 |
T |
|
| Q |
219 |
caaagattgcaggcacatcttcaaatctgaagctggaatcttagttgcttgctcaatttccttgtagtataatcta |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
15214902 |
caaagattgcaggcacatcttcaaatctgaagctggaatctcagttgcttgctcaatttccttgtagcttaatcta |
15214977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 56 - 285
Target Start/End: Original strand, 14748832 - 14749061
Alignment:
| Q |
56 |
ttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttatacaattttctactgaacttgtcattaacaaagaatgcatc |
155 |
Q |
| |
|
|||| |||||||||||||| | |||| ||| || ||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
14748832 |
tttttagtttctccggttccgattccttttgagtaactacagttcctatttttaccttatacagtttgctactgaatttgtcattaacaatgaatgcatc |
14748931 |
T |
|
| Q |
156 |
aatctcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagccaaagattgcaggcacatcttcaaatctgaagctgga |
255 |
Q |
| |
|
| ||||||||||| ||| |||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14748932 |
atcctcactaacatctttactcataggctccttcctaaggacatttcttcccttaaccaaagccaaagattgcaggcacctcttcaaatctgaagctgga |
14749031 |
T |
|
| Q |
256 |
atcttagttgcttgctcaatttccttgtag |
285 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |
|
|
| T |
14749032 |
atctcggttgcttgctcaatttccctgtag |
14749061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 60 - 285
Target Start/End: Original strand, 14763885 - 14764110
Alignment:
| Q |
60 |
cagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttatacaattttctactgaacttgtcattaacaaagaatgcatcaatc |
159 |
Q |
| |
|
|||||||||| |||| | |||| ||| ||||| ||| |||||||||||| |||||||| ||| || || || ||||||||||| |||||| ||| | |
|
|
| T |
14763885 |
cagtttctccagttccgattccttttgtgcaacaacagttcctatttttatcttatacagtttactgctaaatctgtcattaacatagaatgtgtcatcc |
14763984 |
T |
|
| Q |
160 |
tcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagccaaagattgcaggcacatcttcaaatctgaagctggaatct |
259 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14763985 |
tcgctaacatctttacccataggctccttcctaaggacatttcttcccttaaccaaagccaaagattgcaggcacctcttcaaatctgaagctggaatct |
14764084 |
T |
|
| Q |
260 |
tagttgcttgctcaatttccttgtag |
285 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
14764085 |
cggttgcttgctcaatttccctgtag |
14764110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 17620903 - 17621168
Alignment:
| Q |
20 |
tctgcggcctccgctcctcctcaacnnnnnnnngagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttatacaa |
119 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||| |||||||||||||||| |||| ||| || ||||||| |||||||||||| |||||||| |
|
|
| T |
17620903 |
tctgcggcttccgctcctccttaactctttgtcgagtttttagtttctccggttcagattccttttgagtaactacagttcctatttttatcttatacag |
17621002 |
T |
|
| Q |
120 |
ttttctactgaacttgtcattaacaaagaatgcatcaatctcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagcc |
219 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||| ||| ||||||| ||| || ||||||||||||| ||||||| | | ||||||||||||||| |
|
|
| T |
17621003 |
tttgctactgaacttgtcattaacatagaatgcgtcatcctcgctaacatctttactcgtaggctccttcctcaggacatttcttcccttaaccaaagcc |
17621102 |
T |
|
| Q |
220 |
aaagattgcaggcacatcttcaaatctgaagctggaatcttagttgcttgctcaatttccttgtag |
285 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17621103 |
aaagattgcaggcacctcttcaaatctgaagctggaatttcagttgcttgctcaatttccttgtag |
17621168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 60 - 285
Target Start/End: Complemental strand, 17564714 - 17564489
Alignment:
| Q |
60 |
cagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttatacaattttctactgaacttgtcattaacaaagaatgcatcaatc |
159 |
Q |
| |
|
|||||||||| |||| | |||| ||| ||||| ||| |||||||||||| |||||||| ||| || || || ||||||||||| |||||| ||| | |
|
|
| T |
17564714 |
cagtttctccagttccgattccttttgtgcaacaacagttcctatttttatcttatacagtttactgctaaatctgtcattaacatagaatgtgtcatcc |
17564615 |
T |
|
| Q |
160 |
tcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagccaaagattgcaggcacatcttcaaatctgaagctggaatct |
259 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17564614 |
tcgctaacatctttacccataggctccttcctaaggacatttcttcccttaaccaaagccaaagattgcaggcacctcttcaaatctgaagctggaatct |
17564515 |
T |
|
| Q |
260 |
tagttgcttgctcaatttccttgtag |
285 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
17564514 |
cggttgcttgctcaatttccctgtag |
17564489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 285
Target Start/End: Original strand, 24394298 - 24394530
Alignment:
| Q |
53 |
gagttttcagtttctccggttcaggttccgtttcagcaactacacttcctatttttaccttatacaattttctactgaacttgtcattaacaaagaatgc |
152 |
Q |
| |
|
|||||| | ||||||| ||||| | |||| ||| ||||||||| |||||||||| ||||| || | ||| ||||||||||||||||| ||| |||| || |
|
|
| T |
24394298 |
gagtttcctgtttctcaggttcggattccttttgtgcaactacagttcctattttaaccttgtatagtttactactgaacttgtcattgacagagaaagc |
24394397 |
T |
|
| Q |
153 |
atcaatctcactaacataattattcataggctccttccttaggacatctttacccttaaccaaagccaaagattgcaggcacatcttcaaatctgaagct |
252 |
Q |
| |
|
|||| ||||| ||||| ||| |||| |||||||| || ||||||| | | |||||||| |||||||| |||||||| || |||| | ||| | || |
|
|
| T |
24394398 |
atcatcctcaccaacatctttactcatcggctcctttctaaggacatttcttcccttaactaaagccaatgattgcagacatctcttaagatccggggca |
24394497 |
T |
|
| Q |
253 |
ggaatcttagttgcttgctcaatttccttgtag |
285 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |
|
|
| T |
24394498 |
ggaatctcagttgcttgctcaatctccttgtag |
24394530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University