View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3791_high_6 (Length: 271)
Name: NF3791_high_6
Description: NF3791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3791_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 13009309 - 13009555
Alignment:
| Q |
1 |
gaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctttgagtgaa |
100 |
Q |
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| T |
13009309 |
gaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctttgagtgaa |
13009408 |
T |
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| Q |
101 |
gagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaag |
200 |
Q |
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| T |
13009409 |
gagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaag |
13009508 |
T |
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| Q |
201 |
tgtttcatagaattgttcgtggtagaatggaagggcttgattctgtt |
247 |
Q |
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| T |
13009509 |
tatttcatagaattgttcgtggtagaatggaagggcttgattctgtt |
13009555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 12976910 - 12977161
Alignment:
| Q |
1 |
gaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctttgagtgaa |
100 |
Q |
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| T |
12976910 |
gaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctttgagtgaa |
12977009 |
T |
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| Q |
101 |
gagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaag |
200 |
Q |
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| T |
12977010 |
gagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggattggatcctttggaaatacaagtcagagaag |
12977109 |
T |
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| Q |
201 |
tgtttcatagaattgttcgtggtagaatggaagggcttgattctgttgcttg |
252 |
Q |
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| T |
12977110 |
tgtttcatagaattgttcatggtagaatggaagggcttgattctcttgcttg |
12977161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 13031667 - 13031909
Alignment:
| Q |
1 |
gaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctttgagtgaa |
100 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
13031667 |
gaagagttgttgcggacttttgaaggagattctggagattgagaagtgtgctagggggatgaatgaactggctgattctttgcggtttcctttgagtgaa |
13031766 |
T |
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| Q |
101 |
gagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaag |
200 |
Q |
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| T |
13031767 |
gagaaagaagaggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaag |
13031866 |
T |
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| Q |
201 |
tgtttcatagaattgttcgtggtagaatggaagggcttgattc |
243 |
Q |
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| T |
13031867 |
tgtttcatagaattgtttgtggtagaatggaagggcttgattc |
13031909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13012867 - 13013108
Alignment:
| Q |
1 |
gaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctttgagtgaa |
100 |
Q |
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||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13012867 |
gaagagttgttgcggacttttgagggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctgtggaatttcctttgagtgaa |
13012966 |
T |
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| Q |
101 |
gagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaag |
200 |
Q |
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||||||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | || |||||| ||||||| |
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| T |
13012967 |
gagaaagaagaggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttcgtaatacaagtcagagaag |
13013066 |
T |
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| Q |
201 |
tgtttcatagaattgttcgtggtagaatggaagggcttgatt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
13013067 |
tgtttcatagaattgttcgtggtagaatggaagggcttgatt |
13013108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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