View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3791_low_11 (Length: 235)
Name: NF3791_low_11
Description: NF3791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3791_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 22775741 - 22775600
Alignment:
| Q |
4 |
taatcaattgcttcgatcaaccaatctatttcaattgctacactaattcttacatttaattttattgttatttgaagatttttcaggatttcaattataa |
103 |
Q |
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| T |
22775741 |
taatcaattgctacgatcaaccaatctattacaattgctaccctaattctcacatttaatttaattgttatttgaagatttctcagtatttcaattataa |
22775642 |
T |
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| Q |
104 |
tgtaaacgctggaataaactttttgagatttatcaaagtttg |
145 |
Q |
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| T |
22775641 |
tgtaaacgctggaatagactttttgagatttatcaaagtttg |
22775600 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 9915416 - 9915494
Alignment:
| Q |
67 |
attgttatttgaagatttttcaggatttcaattataatgtaaacgctggaataaactttttgagatttatcaaagtttg |
145 |
Q |
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|||||| |||||| |||| |||| ||||||| | ||||||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
9915416 |
attgttgtttgaatatttctcagtatttcaactctaatgtaaaagctgaaataaactttttgggatttatcaaagtttg |
9915494 |
T |
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