View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3791_low_3 (Length: 468)
Name: NF3791_low_3
Description: NF3791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3791_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 2461927 - 2462358
Alignment:
| Q |
19 |
cataaaacatttgcagcaatgtggttggttatatatggtcaccggaattttaatcggcagcactaatttcaagtggttcttgatgtgtgtgcgttatatg |
118 |
Q |
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| T |
2461927 |
cataaaacatttgcagcaatgtggttggttatatatggtcaccggaattttaatctgcagcactaatttcaagtggttcttgatgtgtgtgcgttatatg |
2462026 |
T |
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| Q |
119 |
caggtgaagcaaacaaaatatagtcgttgcattggtagtggatatggtaatggggtataaacagtgttcaaaataaagaattggaatagtcacattatta |
218 |
Q |
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| T |
2462027 |
caggtgaagcaaacaaaatatggtcgttgcattggtcgtggatatggtaatggagtataaacagtgttcaaaataaagaattggaatagtcatattatta |
2462126 |
T |
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| Q |
219 |
atgtattttgtactatgataaagcgaatttccaaaatggattatgtaagatgtaaatcaaacaaatttgtgtatcagttagcatacactttaagaaatta |
318 |
Q |
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| T |
2462127 |
atgtattttgtactatgataaagtgaatttccaaaatggattttgtaagatgtaaatcaaacaaatttgtgtatcagttagcatacactttaagaaatta |
2462226 |
T |
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| Q |
319 |
ttcacactttagcacttacaaaagctttaaagaatctgtctcaaattttgtctattcgcaatagctaaattaacttctatccgcgctctcaatcctcacc |
418 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462227 |
ttcacactttagcacttacaaaagcttcaaagaatttgtctcaaattttgtctattcacaatagctaaattaacttctatccgcgctctcaatcctcacc |
2462326 |
T |
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| Q |
419 |
tcccttgttacgtgcagcctacgtaccctact |
450 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2462327 |
tcccttgttacgtgcagcctacgtaccctact |
2462358 |
T |
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