View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_high_10 (Length: 353)
Name: NF3792_high_10
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5935460 - 5935671
Alignment:
| Q |
1 |
ttttgagcttcgaagcctttcttgatcttgatgaatatctaaaattaatcttatctaaatatttgctaatgagaaacaaatcatttcaaaaaatagctca |
100 |
Q |
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| T |
5935460 |
ttttgagcttcgaagcctttcttgatcttgatgaatctctagaattaaacttatctaaacatttgctaatgagaaacaaagcatttcaaaaaatagctca |
5935559 |
T |
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| Q |
101 |
aatgaaagtgaagttagagaatctcaaaaaccatcattcattcaaacctactcctcctttaattattacattttctttagcaaccctttgaagtgataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5935560 |
aatgaaagtgaagttagagaatctcaaaaaccatcattcattcaaacctactcctcctttaattattacattttctttagcaaccctttgaagtgataag |
5935659 |
T |
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| Q |
201 |
tgaaaaagatgg |
212 |
Q |
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|||||||||||| |
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| T |
5935660 |
tgaaaaagatgg |
5935671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 5935721 - 5935758
Alignment:
| Q |
262 |
atcatccatgaaaagcaccctatttgcttgcaaagttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5935721 |
atcatccatgaaaagcaccctatttgcttgcaaagttg |
5935758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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