View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_high_18 (Length: 237)
Name: NF3792_high_18
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 416666 - 416868
Alignment:
| Q |
1 |
tgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgttcgtggctctgtgctcattgacaagttcaaaaaagaaattcagctccgaggattgaaagat |
100 |
Q |
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| T |
416666 |
tgtgtgtgctcatggaagtcgtgacgtgaggtgtggtgtttgtgggcctgtgctcattgacaagttcaatgaagaagttcagctccgaggattgaaagat |
416765 |
T |
|
| Q |
101 |
cagatatcagttttggcatgttaccatattggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcatt |
200 |
Q |
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| T |
416766 |
cagatatcagttttggcatgttctcatattggtggtcataagtatgctggcaatttaatcacatttagtcatggaccagatggaaaaattatgggtcatt |
416865 |
T |
|
| Q |
201 |
ggt |
203 |
Q |
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||| |
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| T |
416866 |
ggt |
416868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 398587 - 398485
Alignment:
| Q |
48 |
ctgtgctcattgacaagttcaaaaaagaaattcagctccgaggattgaaagatcagatatcagttttggcatgttaccatattggtggtcataactatgc |
147 |
Q |
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|||| |||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| |
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| T |
398587 |
ctgttctcattgacaagctcaatgaagacattcagctcagaggattgaaagatcagatatcagttatggcatgctctcatattggtggtcataaatatgc |
398488 |
T |
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| Q |
148 |
tgg |
150 |
Q |
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||| |
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| T |
398487 |
tgg |
398485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 405495 - 405599
Alignment:
| Q |
1 |
tgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgttcgtggctctgtgctcattgacaagttcaaaaaagaaattcagctccgaggattgaaagat |
100 |
Q |
| |
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|||||||||||| |||||||| || ||||||||||||||| |||| |||| |||||||||||| |||| |||||||||||||| |||||| |||||| |
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| T |
405495 |
tgtgtgtgctcacggaagtcgtgatgtgaggtgtggtgtttgtgggcctgttctcattgacaagctcaatgaagaaattcagctcaaaggatttaaagat |
405594 |
T |
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| Q |
101 |
cagat |
105 |
Q |
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||||| |
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| T |
405595 |
cagat |
405599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22517152 - 22517025
Alignment:
| Q |
1 |
tgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgttcgtggctctgtgctcattgacaagttcaaaaaagaaattcagctccgaggattgaaagat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22517152 |
tgtgtgtgctcatggaagtcgcgacgtgaggtgcggtgtttgtggctctgtgctcattgacaagttcaaagaagaaattcagctccgaggattgaaagat |
22517053 |
T |
|
| Q |
101 |
cagatatcagttttggcatgttaccata |
128 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
22517052 |
cagatatcagttttggcatgttatcata |
22517025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 22513814 - 22513714
Alignment:
| Q |
128 |
attggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcattggtatggctatgttactcgtgatgatg |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22513814 |
attggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcattggtatggctatgttactcgtaatgatg |
22513715 |
T |
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| Q |
228 |
t |
228 |
Q |
| |
|
| |
|
|
| T |
22513714 |
t |
22513714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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