View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_high_3 (Length: 524)
Name: NF3792_high_3
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 6 - 508
Target Start/End: Complemental strand, 4513235 - 4512733
Alignment:
| Q |
6 |
cacagacggacaatgaataaaaaacgaatgagaagagtcattcttcgttatcatccatatgaagtgataaggaagccgaaattttcaacataaagctact |
105 |
Q |
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| T |
4513235 |
cacaaacggacaatgaataaaaaacgaatgagaagagtcattcttcgttatcatccatatgaagtgataaggaagccgaaattttcaacataaagctact |
4513136 |
T |
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| Q |
106 |
agccgtgttttcacattacctgagtccacgtataagcttcttctgcagtacattctgactgagatgttgggttggaaagagcaagaataataggtttctg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4513135 |
agccgtgttttcacattacctgagtccacgtataagcttcttctgcagtacattctgactgagatgttgggttggaaagagcaagaataataggtttctg |
4513036 |
T |
|
| Q |
206 |
cgagcattaccatatggcgcatggattcagataacataagcatcaaattgcatattgggatgatgaataggttgacaaagtaccttatttaaagaggcca |
305 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4513035 |
cgagcattaccatatggcacatggattcagataacataagcatcaaattgcatattgggatgatgaataggttgacaaagtaccttatttaaagaggcca |
4512936 |
T |
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| Q |
306 |
tcgcttcaacaacatcctgagtaaaagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512935 |
tcgcttcaacaacatcctgagtaaaagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaa |
4512836 |
T |
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| Q |
406 |
aaatttgaaacttcttttctctccgannnnnnnnnnnnnnnnnnnagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaa |
505 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4512835 |
aaatttgaaacttcttttctctccgagtgtgtgtgcttgtgtgtgagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaa |
4512736 |
T |
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| Q |
506 |
cag |
508 |
Q |
| |
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||| |
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| T |
4512735 |
cag |
4512733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 43432279 - 43432373
Alignment:
| Q |
120 |
attacctgagtccacgtataagcttcttctgcagtacattctgactgagatgttgggttggaaagagcaagaataataggtttctgcgagcatta |
214 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||| ||||||||||||||||| | ||||||| |
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| T |
43432279 |
attacctgtgtccacgtataagcttcttcagcagtacattcggactgtgacgttgggttggaaagagaaagaataataggtttctacaagcatta |
43432373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 43432439 - 43432557
Alignment:
| Q |
267 |
gatgaataggttgacaaagtaccttatttaaagaggccatcgcttcaacaacatcctgagtaaaagttctcccttgccctgatgttccaatcaacactgt |
366 |
Q |
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||||| ||| ||||| |||||||| || | |||||||||||| ||||| || || | ||||| | || ||||| || ||||||||||| | |||||| |
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| T |
43432439 |
gatgagtagattgactaagtacctcgttaatagaggccatcgcctcaaccacctctttggtaaacgcacttccttgtcccgatgttccaataagcactgt |
43432538 |
T |
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| Q |
367 |
tggcttaatttgctgaaaa |
385 |
Q |
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||||||||||| ||||||| |
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| T |
43432539 |
tggcttaattttctgaaaa |
43432557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 3533733 - 3533801
Alignment:
| Q |
344 |
cctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaatttga |
413 |
Q |
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|||||| ||||||||||||||||||||||||||||| | ||||||||||||| |||| ||| |||||||| |
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| T |
3533733 |
cctgatattccaatcaacactgttggcttaatttgccg-aaaagaaaacattcaaatatgagaaatttga |
3533801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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