View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3792_high_5 (Length: 415)
Name: NF3792_high_5
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 2794427 - 2794217
Alignment:
| Q |
3 |
gtcatcagcctcacccaaaaccttcaacacctcatcagcaagccttcgacaattttctggatcaatctctggtccaaaagccggcgagattttcctctga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794427 |
gtcatcagcctcacccaaaaccttcaacacctcttcagcaagccttcgacaattttccggatcaatctctggtccaaaagccggcgagattttcctctga |
2794328 |
T |
|
| Q |
103 |
agccaatacgcatcaatatcatgcacattcaattcttcatcatctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794327 |
agccaatacgcatcaatatcatgcacattcaattcttcatcatctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcac |
2794228 |
T |
|
| Q |
203 |
ctatttcaaaa |
213 |
Q |
| |
|
||||||||||| |
|
|
| T |
2794227 |
ctatttcaaaa |
2794217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 2794149 - 2794033
Alignment:
| Q |
281 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaatcagttataacctttccaatcgaaacaag |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2794149 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaatcagttataagctttccaatcgaaacaag |
2794050 |
T |
|
| Q |
381 |
gtgattaaacacagtat |
397 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2794049 |
gtgattaaacacagtat |
2794033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University