View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3792_low_12 (Length: 296)

Name: NF3792_low_12
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3792_low_12
NF3792_low_12
[»] chr2 (2 HSPs)
chr2 (17-277)||(26661413-26661673)
chr2 (52-182)||(6049912-6050043)
[»] chr6 (2 HSPs)
chr6 (17-277)||(21481331-21481591)
chr6 (44-180)||(19701161-19701298)
[»] chr7 (2 HSPs)
chr7 (58-256)||(13331531-13331727)
chr7 (58-256)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (58-256)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (44-211)||(10637619-10637786)
chr8 (44-211)||(32717808-32717975)
[»] chr1 (2 HSPs)
chr1 (44-211)||(22893774-22893941)
chr1 (52-182)||(44306129-44306259)
[»] chr3 (1 HSPs)
chr3 (58-239)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (44-180)||(9594-9731)
[»] chr4 (1 HSPs)
chr4 (52-133)||(13893697-13893778)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 26661673 - 26661413
Alignment:
Q  17 ataagcaacaaacagcagacnnnnnnncagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttg 116  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661673 ataagcaacaaacagcagacaaaaaaacagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttg 26661574  T
Q  117 aacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgttt 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661573 aacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgttt 26661474  T
Q  217 agctggaatcatagaaaaagaatagcgggaatggcaagggtagaagaggtatattcttgga 277  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  26661473 agcgggaatcagagaaaaagaatagcgggaatggcaagggtagaagaggtattttgttgga 26661413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 6050043 - 6049912
Alignment:
Q  52 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaag 151  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||| |||||||||||||| | |||| || | |||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 6049944  T
Q  152 tagttgatgcaca-cacaaagatcatgggttt 182  Q
     |||||||| ||| ||||||||| ||||||||    
T  6049943 cagttgatgaacaccacaaagatgatgggttt 6049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 21481591 - 21481331
Alignment:
Q  17 ataagcaacaaacagcagacnnnnnnncagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttg 116  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21481591 ataagcaacaaacagcagacaaaaaaacagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttg 21481492  T
Q  117 aacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgttt 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481491 aatagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgttt 21481392  T
Q  217 agctggaatcatagaaaaagaatagcgggaatggcaagggtagaagaggtatattcttgga 277  Q
    ||| ||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||    
T  21481391 agcgggaatcagagaaaaagaatagcaggaatggcaagggtagaagaggtattttgttgga 21481331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 19701298 - 19701161
Alignment:
Q  44 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 143  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||| ||||||||| ||||| |||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
Q  144 ttggcaagtagttgatgcacac-acaaagatcatgggt 180  Q
     | ||||| |||||||| |||| |||||||||||||||    
T  19701198 atagcaagcagttgatgaacactacaaagatcatgggt 19701161  T

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Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 58 - 256
Target Start/End: Original strand, 13331531 - 13331727
Alignment:
Q  58 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 157  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  158 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 256  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||    
T  13331631 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatggcaaggg 13331727  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 256
Target Start/End: Original strand, 13342446 - 13342642
Alignment:
Q  58 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 157  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  158 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 256  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  13342546 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 13342642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 256
Target Start/End: Original strand, 5672002 - 5672198
Alignment:
Q  58 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 157  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  158 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 256  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  5672102 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 5672198  T

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Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 10637786 - 10637619
Alignment:
Q  44 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 143  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa 10637687  T
Q  144 ttggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 211  Q
       ||||| |||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  10637686 acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 10637619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 32717808 - 32717975
Alignment:
Q  44 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 143  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 32717907  T
Q  144 ttggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 211  Q
       ||||| |||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  32717908 acagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 32717975  T

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Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 22893941 - 22893774
Alignment:
Q  44 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 143  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa 22893842  T
Q  144 ttggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 211  Q
       ||||| |||||||| |||| |||||||||||||||||| |||| || |||| ||||||||||||||    
T  22893841 acagcaagcagttgatgaacactacaaagatcatgggtttcctttt-tatagaagatcatgggtgaaaa 22893774  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 44306259 - 44306129
Alignment:
Q  52 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaag 151  Q
    |||||||||| ||||||||||||||||||||||||||||||   | | |||| |||| ||||||||| |||||||||||||| | |||| || | |||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 44306161  T
Q  152 tagttgatgcaca-cacaaagatcatgggttt 182  Q
     |||||||| ||| ||||||||| ||||||||    
T  44306160 cagttgatgaacaccacaaagatgatgggttt 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 15761973 - 15762154
Alignment:
Q  58 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 157  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || |||| |||| ||||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg 15762072  T
Q  158 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaat 239  Q
    ||| ||| |||||||||||  | |  |||||||| |||| | |||| ||||||||||||||  ||||||| |||||||||||    
T  15762073 atgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 9731 - 9594
Alignment:
Q  44 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 143  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
Q  144 ttggcaagtagttgatgcacac-acaaagatcatgggt 180  Q
        |||| |||||||| |||| |||||||||||||||    
T  9631 acaacaagcagttgatgaacactacaaagatcatgggt 9594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 13893697 - 13893778
Alignment:
Q  52 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatc 133  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||| ||||||||||||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatc 13893778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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