View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_13 (Length: 279)
Name: NF3792_low_13
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 44603591 - 44603361
Alignment:
| Q |
17 |
agagaaaagggaaaatgggaatctagtcctgatatttttggtcaattttctgctgatcctgatcaagaatctaacttaactccatgaattctcagtgatt |
116 |
Q |
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| T |
44603591 |
agagaaaagggaaaatgggaatctagtcctgatatttttggtcaattttctgctgatcctgatcaagaatctaacttaactccatgaattctcagtgatt |
44603492 |
T |
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| Q |
117 |
gattagatattcatagacattcttgtcatcattaatacttatttgagcattaaagaaaatagtttgattaaaggtttgatgtgtatagatgcatgtatag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
44603491 |
gattagatattcatagacattcttgtcatcattaatacttatttgagcattaaagaaaatattttgattaaaggtttgatgtgtatagatgcatgtagag |
44603392 |
T |
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| Q |
217 |
aatgcaatgtttgttctcaataaagtaagta |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44603391 |
aatgcaatgtttgttctcaataaagtaagta |
44603361 |
T |
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