View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_14 (Length: 278)
Name: NF3792_low_14
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 49708112 - 49708357
Alignment:
| Q |
16 |
cctgtggttcaaacaatttttgttaagttgattgccaattaaatacacaatgtattttatttttgctagaaagaggaaacaatcaacaacacctttatag |
115 |
Q |
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| T |
49708112 |
cctgtggttcaaacaacttttgttaagttgattgccaattaaatacacaatgtattttatttttgctagaaagaggaaacaatcaacaacacctttatag |
49708211 |
T |
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| Q |
116 |
cctcttgaaagaaaagaacagtgattagcatgccaaataactcccctgcaattcttgtaaatctagtgataatattgcaagcattgaaaattgcaagcaa |
215 |
Q |
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| T |
49708212 |
cctcttgaaagaaaagaacagtgattagcatgccaaataactcccctgcaattcttgtaaatctagtgataatattgcaagcattgaaaattgcaagcaa |
49708311 |
T |
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| Q |
216 |
aattaacatcaatgccgtccaaacacaaaccctggaacacaaatac |
261 |
Q |
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| T |
49708312 |
aattaacatcaatgccgtccaaacacaaaccctggaacacaaatac |
49708357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 2233583 - 2233435
Alignment:
| Q |
106 |
acctttatagcctcttgaaagaaaagaacagtgattagcatgccaaataactcccctgcaattcttgtaaatctagtgataatattgcaagcattgaaaa |
205 |
Q |
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|||| |||||||| ||| | |||||||||||| |||| |||| ||||||| ||| |||||| || ||||| ||||||||||| || |||||||||| |
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| T |
2233583 |
acctctatagcctgttgcatgaaaagaacagtaattaacatggcaaataattcctctgcaaccctagtaaacctagtgataattgaacatgcattgaaaa |
2233484 |
T |
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| Q |
206 |
ttgcaagcaaaattaacatcaatgccgtccaaacacaaaccctggaaca |
254 |
Q |
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| T |
2233483 |
ttgcaagcagcatcagcaacaatgatgtccaaacacaaaccctgcaaca |
2233435 |
T |
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