View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_16 (Length: 248)
Name: NF3792_low_16
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_16 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 29471270 - 29471020
Alignment:
| Q |
11 |
aatatcaatcactgaatgaaggctaccctt-agaaagcctaacaaaatcattttgaagattagatttagatcattgtttgtatatgtactacatattcat |
109 |
Q |
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| T |
29471270 |
aatattaatcactgaatgaaggctaccctttagatagcctaacaaaatcattttgaagactagatttagatcattgtttgtatatgtcctacatatttat |
29471171 |
T |
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| Q |
110 |
cttttccacatctcttattacatatcctcaact-------------gatcttttagaatactttgacattaccatatcttagtgtttgatgtaattggtt |
196 |
Q |
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| T |
29471170 |
ctttttcacatctcttgttgcatatcctcaactttcttaaaactaggatcttttagaatactttgaca-tgtcatatcttagtgtttgatgtaattggtt |
29471072 |
T |
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| Q |
197 |
cacaaactatagctcgtcttatgagggaaatggattagttatatatctcatc |
248 |
Q |
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| T |
29471071 |
cacaaactatagctgctcttatgagggaaatggattagttatatatctcatc |
29471020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 29461641 - 29461503
Alignment:
| Q |
5 |
tccaagaatatcaatcactgaatgaaggctaccctt-agaaagcctaacaaaatcattttgaagattagatttagatcattgtttgtatatgtactacat |
103 |
Q |
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| T |
29461641 |
tccaaaaatattaatcactgaatgaaggctaccctttagctagccaaacaaaattattttgaagattagatttagatcattgtttgtatatgtaatacat |
29461542 |
T |
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| Q |
104 |
attcatcttttccacatctcttattacatatcctcaact |
142 |
Q |
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| T |
29461541 |
attcatcttttccacatctcttaataaatatcctcaact |
29461503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 29461422 - 29461367
Alignment:
| Q |
177 |
agtgtttgatgtaattggttcacaaactatagctcgtcttatgagggaaatggatt |
232 |
Q |
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| T |
29461422 |
agtgtttgatgtaattggttcacaaaccataactcgtattacgagggaattggatt |
29461367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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