View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3792_low_17 (Length: 244)
Name: NF3792_low_17
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 243706 - 243933
Alignment:
| Q |
1 |
ttctttccttaaattgaattgatcattaaaattaggaattactatcatattcatgctcttctgaaccttctcatcgatcctcaactcctcatgttgtgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
243706 |
ttctttccttaaattgaattgatcattaaaattaggaattactatcatattcatgctcttctgaaccttctcatcgatcctcaactcctcatgttgtgct |
243805 |
T |
|
| Q |
101 |
cataatatggtaattaaagtgtttatgctcataaattagtgaatttgcaaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
243806 |
cataatatggtaattaaagtgtttatgctcataaattagtgaatttgcaaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaattt |
243905 |
T |
|
| Q |
201 |
ggtttatgatagaggttgacaaaaacat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
243906 |
ggtttatgatagaggttgacaaaaacat |
243933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University