View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_2 (Length: 616)
Name: NF3792_low_2
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Original strand, 14735983 - 14736572
Alignment:
| Q |
1 |
accgtactaccttgcgttctgtgtgctcattagatggtgtactaaaactcgaaaggaaacgatgcttaatatatttgtcaggtaatgtatttgtatacaa |
100 |
Q |
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| T |
14735983 |
accgtactaccttgcattctgtgtgctcattagttggtgtactaaaactcgaacggaaacgatgcttaatatatttgtcaggtaatgtatctgtatacaa |
14736082 |
T |
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| Q |
101 |
atatgatgtgtaccgcatagagtttttcgatgagagatcagagtaatgatagaagtaatgtcgcatatattgtgatgagtagagagaagtatagttaacg |
200 |
Q |
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| T |
14736083 |
atatgatgtgtaccgcatagagtttttccatgagagatcagagtactg------------tcgcatatattgggatgagtagagagaagtatagttaacg |
14736170 |
T |
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| Q |
201 |
ggaccatcaaccgggttattgggagatcgtatgcgatattaagagacttaatgaaggtattcaagtgttagtgacctaagacagagttgtacaaataagt |
300 |
Q |
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| T |
14736171 |
ggaccatcaaccgggttattgggagatcgtatgcgatattcagagacttaatgaaggtattcaagtgttagtgacctaagacagagttgtacaaataagt |
14736270 |
T |
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| Q |
301 |
ggattaaggaacttactaacaaatgccaaatgtattggcgtgtttggttttgtttttctccatctccgaggtgtatgagccaccacataaatcataacca |
400 |
Q |
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| T |
14736271 |
ggattaaggaacttactaacaaatgtcagatgtattggcgtgtttggttttgtttttctctatctccgaggtgtatgagccaccacacaaatcataacca |
14736370 |
T |
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| Q |
401 |
aggaaatgtgttatggaaattattcagcttgaggaattgaagattttctgattttggaaaagcacccatttatctatcaacccaagttagatatttttga |
500 |
Q |
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| T |
14736371 |
agaaaatgtgttatggaaattattcagcttgaggaattgaagattttctgattttggaaaagcactcatttatctatcaacccaagttagatatttttga |
14736470 |
T |
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| Q |
501 |
atgctatgtcgtcaagaccaagattaggaacgtcatttaagaatattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgacaca |
600 |
Q |
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| T |
14736471 |
atgatatgtcgtcaagaccaagattaggaacgtcatttaagaatattcaccgaaatttgaatatctctctaaagacttgaggaaagatatgaatgacaca |
14736570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 15597220 - 15597305
Alignment:
| Q |
26 |
ctcattagatggtgtactaaaactcgaaaggaaacgatgcttaatatatttgtcaggtaatgtatttgtatacaaatatgatgtgt |
111 |
Q |
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| T |
15597220 |
ctcattaggtggtgtactaacactcggagagaaaccatgctttatgtatttgtcaagtaatatatttgtattcagatatgatgtgt |
15597305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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