View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_20 (Length: 235)
Name: NF3792_low_20
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_20 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 1303 - 1091
Alignment:
| Q |
18 |
aaaacaaaagcatttctgacagagtgaagccaaagaaaactcatgtgggaatctagtcaagtaaataaata------ctcaaacccctttaaattactac |
111 |
Q |
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| T |
1303 |
aaaacaaaagcatttctgacagagtgaagccaaagaaaactcatgtgggaatctagtcaagtaaataaataaatatactcaaacccctttagattactac |
1204 |
T |
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| Q |
112 |
ataaattattactctatagtttctcatttattacttccacgtatggtatgatcgagtctataactcatacgtacacttgttggtaagtcgaataggttta |
211 |
Q |
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| T |
1203 |
ataaattattactctatagtttctcatttattacttccacgtatggtatgatcgagtctatagctcatacgtacacttgttggtaagtcgaataggttta |
1104 |
T |
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| Q |
212 |
cccatattcttcg |
224 |
Q |
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||||| ||||||| |
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| T |
1103 |
cccattttcttcg |
1091 |
T |
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