View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_24 (Length: 221)
Name: NF3792_low_24
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 5100524 - 5100337
Alignment:
| Q |
20 |
atataccatttaaatgtcttttaacaaaatggactcaaatagt-atagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatagc |
118 |
Q |
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| T |
5100524 |
atataccatttaaatgtcttttaacaaaatggactcaaatagttatagcatttaaatgtttagcaaa-cttctgtagtcctaaataataggatatatagc |
5100426 |
T |
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| Q |
119 |
tgccaagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaagctcatttcctttgct |
208 |
Q |
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| T |
5100425 |
tgccaagaagaaactctgatttgaacaatgagca-ttttacctcagcatcaggttttatagttatatggctcaagctcatttcctttgct |
5100337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 5135625 - 5135559
Alignment:
| Q |
20 |
atataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa |
85 |
Q |
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| T |
5135625 |
atataccatttaaatgtcttttaacaaaatggactcaaatagttatagcatttaaatgtttagcaaa |
5135559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 2939463 - 2939549
Alignment:
| Q |
123 |
aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaagctcatttcctttgctac |
210 |
Q |
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| T |
2939463 |
aagaagaaactctgatttgagcagtgagcatttt-acctcagcatcagactccatagttatcttgctcaagctcatttccattgctac |
2939549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 5351952 - 5352065
Alignment:
| Q |
27 |
atttaaatgtcttttaacaaaatggactcaaatagt-atagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatagctgccaag |
125 |
Q |
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| T |
5351952 |
atttaaaagtcttttaacaaaatgggcttta-tagttacagcatttaaatgttaag-aaagcttctgtactcatgaatgatagcatatatgactgccaag |
5352049 |
T |
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| Q |
126 |
aataaactctgatttg |
141 |
Q |
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| T |
5352050 |
aagaaactctgatttg |
5352065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 5155663 - 5155594
Alignment:
| Q |
123 |
aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaag |
193 |
Q |
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| T |
5155663 |
aagaagaaaatctgatttgagcaatgagca-ttttacctcagcatcagactccatagttatcttgctcaag |
5155594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 5242154 - 5242120
Alignment:
| Q |
23 |
taccatttaaatgtcttttaacaaaatggactcaa |
57 |
Q |
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| T |
5242154 |
taccatttaaatgtcttttaacaaaatgggctcaa |
5242120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 5427325 - 5427369
Alignment:
| Q |
96 |
tcctaaataataggatatatagctgccaagaataaactctgattt |
140 |
Q |
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| T |
5427325 |
tcctgaatgataggatatatggctgccaagaagaaactctgattt |
5427369 |
T |
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