View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_4 (Length: 509)
Name: NF3792_low_4
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 490
Target Start/End: Original strand, 3744366 - 3744837
Alignment:
| Q |
12 |
atcatcaattatgctagcccaaagctcgttccgtagaaggatttatcgcgtcaaaagtagcaagacatagtgaataaaatatccaacttaaaacaagaaa |
111 |
Q |
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| T |
3744366 |
atcatcaattatgctagctcaaagctcgttccgtagaaggatttatcgcgtcataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaa |
3744465 |
T |
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| Q |
112 |
acatatgctaaatttaatcaaatacatcatatttccctctcttaatccacaattactaattcaaaatcaagaacaaagaacaagaacaatcacaatcaca |
211 |
Q |
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| T |
3744466 |
acatatgctaaatttaatcaaatacatcatatttctctctcttaatccacaattactaattcaaaatcaaga-------acaagaacaatcaaaatcaca |
3744558 |
T |
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| Q |
212 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctggtactc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3744559 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctagtactc |
3744658 |
T |
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| Q |
312 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaatctgaacttgaatggttctgggcttcttaggctgagga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||| |
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| T |
3744659 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaacctgaacctgaatggttctaggtttcttaggctgagga |
3744758 |
T |
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| Q |
412 |
ggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctcag |
490 |
Q |
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| T |
3744759 |
ggaggcaatttctgaacagtaacactcagaaccccatcttgacaaacagcagaaacagcatcagtattagcattctcag |
3744837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
365 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
409 |
Q |
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| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 468
Target Start/End: Original strand, 48302914 - 48303016
Alignment:
| Q |
366 |
tcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaa |
465 |
Q |
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|||||||| || ||| ||||| ||| | ||||||||||| | |||||||||||| || | |||||||||| | ||||| ||||||||| ||||||||||| |
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| T |
48302914 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaa |
48303013 |
T |
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| Q |
466 |
aca |
468 |
Q |
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||| |
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| T |
48303014 |
aca |
48303016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 490
Target Start/End: Complemental strand, 10462434 - 10462346
Alignment:
| Q |
405 |
ctgaggaggaggcaatttct---gaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctcag |
490 |
Q |
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|||||||||||||||||||| || |||||||| | || ||||||||| || | ||||| ||||||||||||| |||||||||||||| |
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| T |
10462434 |
ctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatcagcattagcattctcag |
10462346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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