View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_7 (Length: 371)
Name: NF3792_low_7
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 38887418 - 38887064
Alignment:
| Q |
1 |
atcacaatattttctttcaaggaatgaaagaagtaccatcatggacaggaaaatgtgaaatcacttgagcattgtttgatctatgttgttccccttgatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38887418 |
atcacaatattttctttcaaggaatgaaagaagtaccatcatggacaggaaaatgtgaaatcacttgagcattgtttgatctatgttgttccccttgatc |
38887319 |
T |
|
| Q |
101 |
aaaagatatgaaagaagtactatagtattcaacaaatccactggttttatgattaaccacctcatgcacaccttgatcaccatttagttttttatcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38887318 |
aaaagatatgaaagaagtactatagtattcaacaaatccactggttttatgattaaccacctcatgcacaccttgatcaccatttagttttttatcagaa |
38887219 |
T |
|
| Q |
201 |
aatgatgccgagtctttcatcaatgaaccaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38887218 |
aatgatgccgagtctttcatcaatgaaccaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcat |
38887119 |
T |
|
| Q |
301 |
tgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttg |
355 |
Q |
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| T |
38887118 |
tgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttg |
38887064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 4235894 - 4235779
Alignment:
| Q |
236 |
ttgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcataacccaattt |
335 |
Q |
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| T |
4235894 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
4235795 |
T |
|
| Q |
336 |
gttttctctggctttc |
351 |
Q |
| |
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|| |||||||| |||| |
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| T |
4235794 |
gtcttctctggttttc |
4235779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 355
Target Start/End: Complemental strand, 30506034 - 30505906
Alignment:
| Q |
227 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
326 |
Q |
| |
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||||||||| ||||| || || ||||| |||||||||||||| || || || | ||||||||||| ||||||| | |||||||| || || ||||| |
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| T |
30506034 |
accaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatactgatgcatc |
30505935 |
T |
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| Q |
327 |
acccaatttgttttctctggctttctttg |
355 |
Q |
| |
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| T |
30505934 |
acccaatttgttttctctggctttctttg |
30505906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 34829834 - 34829956
Alignment:
| Q |
227 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
326 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| || || || ||||| || ||||| || |||||||| |||||||| | ||||| |||||||| ||||| |
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| T |
34829834 |
accaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatc |
34829933 |
T |
|
| Q |
327 |
acccaatttgttttctctggctt |
349 |
Q |
| |
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|||||||| || ||||| ||||| |
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| T |
34829934 |
acccaattggtcttctcaggctt |
34829956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 30506218 - 30506154
Alignment:
| Q |
49 |
gaaaatgtgaaatcacttgagcattgtttgatctatgttgttccccttgatcaaaagatatgaaa |
113 |
Q |
| |
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||||||||||||| |||||||||||| | || |||||||| | |||||||||||| ||||||||| |
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| T |
30506218 |
gaaaatgtgaaattacttgagcattgctagacctatgttggttcccttgatcaaatgatatgaaa |
30506154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 43015252 - 43015191
Alignment:
| Q |
282 |
ccttctttctcctcttcattgtttccaagatggtattggtgcataacccaatttgttttctc |
343 |
Q |
| |
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||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| || ||||| |
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| T |
43015252 |
ccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctc |
43015191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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