View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_8 (Length: 365)
Name: NF3792_low_8
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 38887753 - 38887603
Alignment:
| Q |
11 |
cacagacagaattgtagttcaagactgcttaaggtaaaagtcatgtttgtatacagtttgatagttaatatttacccaagtataaaggcatcaagccttt |
110 |
Q |
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| T |
38887753 |
cacagacagaattgtagttcaagactgcttaaggtaaaagtcatgtttgtatacagtttgatagttaatatttacccaagtataaaggcatcaagccttt |
38887654 |
T |
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| Q |
111 |
gttatgtatgttttggtgtcattgtacaaagcatgagaccagctacacttc |
161 |
Q |
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| T |
38887653 |
gttatgtatgttttggtgtcattgtacaaagcatgagaccagctacacttc |
38887603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 38887541 - 38887419
Alignment:
| Q |
225 |
atgtataattttttccttacttatccctcaccattagttttcagatgaagcagttacttttcccctcttaaactactgtttgttattaacttatttcttc |
324 |
Q |
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| T |
38887541 |
atgtataattttttccttacttatccctcaccattagttttcagatgaagcagttacttttcccctcttaaactactgtttgttattaacttatttcttc |
38887442 |
T |
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| Q |
325 |
aaattgtaattaaggatccatgc |
347 |
Q |
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| T |
38887441 |
aaattgtaattaaggatccatgc |
38887419 |
T |
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