View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3792_low_9 (Length: 354)
Name: NF3792_low_9
Description: NF3792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3792_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 30318704 - 30318416
Alignment:
| Q |
6 |
actaactaaccaatcaatatctacaacatgattatgaagatcataacaaaggtagttgcaaatagaatcaaacacactacccgaagctattgatgttgaa |
105 |
Q |
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| T |
30318704 |
actaactaaccaatcaatatctacaacatgattatgaagatcataacaaaggtagttgcaaatagaatcaaacacactacccgaagctattgatgttgaa |
30318605 |
T |
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| Q |
106 |
catagtgtttttctggatggaaggcttattactaataatgcttttgtagctattgaatgctttcattcgcttaagaaggaaaaaacacatattttctatt |
205 |
Q |
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| T |
30318604 |
catagtgtttttctggatggaaggcttatcactaataatgcttttttagctattgaatgctttcattcgcttaagaaggaaaaaacacatattttctatt |
30318505 |
T |
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| Q |
206 |
tcgagggaattttgaatatttacattgtctttgacnnnnnnnntatggtagaaagattatatttcttataagggtggtgatttgagagg |
294 |
Q |
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| T |
30318504 |
tcgagggaattttgaatatttacattgtctttgacaaaaataatatggtagaaagattatatttcttataagggtggtgatttgagagg |
30318416 |
T |
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