View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_high_12 (Length: 309)
Name: NF3793_high_12
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 44886114 - 44885823
Alignment:
| Q |
1 |
ctagtcagtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacatacaatcctaatttagaacataaaagaattag |
100 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
44886114 |
ctagtcagtctttccaatgcataaatggtgacgggaatagccaaatacatccaagtctacaaaacacatacaatcctaattaa-aacataaaagaattag |
44886016 |
T |
|
| Q |
101 |
ctgagaaactacattaaaaggaaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcacaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44886015 |
ctgagaaactacataaaaaggaaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcacaa |
44885916 |
T |
|
| Q |
201 |
tcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgaggaggggttggaggcaattgg |
293 |
Q |
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| T |
44885915 |
tcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgaggaggggttggaggcaattgg |
44885823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 44899533 - 44899243
Alignment:
| Q |
6 |
cagtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacatacaatcctaat--ttagaacataaaagaattagctg |
103 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||| | ||| || || |||||||||||| |
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| T |
44899533 |
cagtctttccaatgcataaatgatgatgggaatagccaaatacatccaagtctaccaaagagatacaataaagttccttaaaatgtacaagaattagctg |
44899434 |
T |
|
| Q |
104 |
agaaactacattaaaagg----aaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcaca |
199 |
Q |
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| T |
44899433 |
agaaactagattaaaagggaaaaaaaaggttaattgaaggaaggtgctaaccgttttcttgtaccattccttagtaaagtaaagtttgaatccatgcaca |
44899334 |
T |
|
| Q |
200 |
atcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgaggaggggttggaggcaattgg |
293 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| | |||||||||||||||||||| |
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| T |
44899333 |
atcaaaagggcatagacaaatacaaagagatgatgagagtaccaaaaggcattgaaaccagtta---tattaatgaggggttggaggcaattgg |
44899243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 44915722 - 44915460
Alignment:
| Q |
1 |
ctagtcagtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacatacaatcctaatttagaacataaaagaattag |
100 |
Q |
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|
|||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
44915722 |
ctagtcagtcgttccaatgcataaatgatgatgggaataaccaaatacatccaagtctacaaaacacatacaatcct----tagaatatacaagaattag |
44915627 |
T |
|
| Q |
101 |
ctgagaaactacattaaaaggaaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcacaa |
200 |
Q |
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|||||||||| || ||||||| ||||| ||| ||||||||||||||||| |||| ||||||| || ||||||||||||| ||||||||||| |
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| T |
44915626 |
ctgagaaactggataaaaagga-------taattcaaggaaggtgctaaccgtttttttgtgccattcccgagtcaagtaaagtttgattccatgcacaa |
44915534 |
T |
|
| Q |
201 |
tcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgagg |
274 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
44915533 |
ccaaaagggcatagacaaatacaaagagatgatgagagtaccaaaaggcattgaaaccagttagactattgagg |
44915460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 39983382 - 39983319
Alignment:
| Q |
7 |
agtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacata |
70 |
Q |
| |
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||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
39983382 |
agtctctccaatccataaatggtgatgggaatagccagatacatccaagtctacaaagcacata |
39983319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 39983236 - 39983118
Alignment:
| Q |
140 |
aaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcacaatcaaaagtgcatagacaaatacaaagagatgatgagtgt |
239 |
Q |
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||||| ||||||||||| | || ||||||||| || |||||||||||| |||||| | |||||| | ||||| |||| | ||||| ||||||| | |
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| T |
39983236 |
aaggtcctaaccgttttatggttccattccttagtcaagtaaagtttggttccatggataatcaacatggcatacacaatgatgaagaggtgatgagaat |
39983137 |
T |
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| Q |
240 |
accaaaagacattgaaacc |
258 |
Q |
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|||||||| |||||||||| |
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| T |
39983136 |
accaaaaggcattgaaacc |
39983118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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