View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_high_19 (Length: 238)
Name: NF3793_high_19
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6492314 - 6492083
Alignment:
| Q |
1 |
taagaaaaattatttaaatcactttatcttgaaaactttgtcatgtgtaatttgtgactcctaaacttgatcattttatgagaatagaaacatcatgata |
100 |
Q |
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| T |
6492314 |
taagaaaaattatttaaatcactttatcttgaaaaatttgtcatgtgtaatttgtgactgctaaacttgatcattttatgagaatagaaacatcatgata |
6492215 |
T |
|
| Q |
101 |
tgcaagaagcatgaattcttcaatgccccaccaccacaaaatgagtatttaattatataactagacaaatccta-----------cagtaacacatacct |
189 |
Q |
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| T |
6492214 |
tgcaagaagcatgaattcttcaatgccccaccaccacaaaatgagtatttaattatataactagacaaatcctactagatataatcagtaacacatacct |
6492115 |
T |
|
| Q |
190 |
ttttgtgtcattgttcttgggataacagaaag |
221 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6492114 |
ttttgtgtcattgttcttgggataacagaaag |
6492083 |
T |
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