View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3793_high_3 (Length: 463)

Name: NF3793_high_3
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3793_high_3
NF3793_high_3
[»] chr5 (2 HSPs)
chr5 (1-456)||(3763675-3764128)
chr5 (75-124)||(42849876-42849925)
[»] chr8 (3 HSPs)
chr8 (75-127)||(926399-926451)
chr8 (61-105)||(31916463-31916507)
chr8 (75-127)||(34522162-34522214)
[»] chr7 (3 HSPs)
chr7 (75-127)||(44917642-44917694)
chr7 (75-125)||(41668218-41668268)
chr7 (75-125)||(41668896-41668946)
[»] chr6 (2 HSPs)
chr6 (75-127)||(33080688-33080740)
chr6 (76-124)||(17241359-17241407)
[»] chr1 (2 HSPs)
chr1 (75-126)||(33527254-33527305)
chr1 (79-112)||(2294827-2294860)
[»] chr4 (3 HSPs)
chr4 (61-127)||(6466152-6466218)
chr4 (77-127)||(53422276-53422326)
chr4 (61-105)||(39886717-39886761)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 3763675 - 3764128
Alignment:
Q  1 gaaccactaagtaatgcctaaaatttgccaagttcaaattgatcacctcaataagttgattttgaatagacaaattattttgcagcttatggcataagcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3763675 gaaccactaagtaatgcctaaaatttgccaagttcaaattgatcacctcaataagttgattttgaatagacaaattattttgcagcttatggcataagcg 3763774  T
Q  101 cttatgaataagtcatttctataacactttcaattacgaaattgatacagaatcatatcggaatcgaaggttaaggtgtgattaagaattggaaatacct 200  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3763775 tttatgaataagtcatttctataacactttcaattatgaaattgatacagaatcatatcggaatcgaaggttaaggtatgattaagaattggaaatacct 3763874  T
Q  201 gaaagcagatggattaatatcccgaaaagcaacaaccttatcatcctgtaatttgggatttggaaagttagaaagaaaagaggaaacagaaacnnnnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           
T  3763875 gaaagcagatggattaatatcccgaaaagcaacaaccttatcatcctgtaatttgagatttggaaagttagaaagaaaagaggaaacagaaac--aacaa 3763972  T
Q  301 nnttgaaagataaacacacgaagactaacagagtggagaatggtattggagttggatttggtggctatgttacagaaaacacacgaccctgtcgctccaa 400  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3763973 aattgaaagataaacacacgaagactaacagagtggagaatggtattggagttggatttggtggctatgttacagaaaacacacgaccctgtcgctgcaa 3764072  T
Q  401 tcattcccgccattgcccataaacatacaatacctcttcttttactacctttgctt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3764073 tcattcccgccattgcccataaacatacaatacctcttcttttactacctttgctt 3764128  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 42849876 - 42849925
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataa 124  Q
    |||||||||||||||||||||||| ||||||| |||||  ||||||||||    
T  42849876 ttattttgcagcttatggcataagtgcttatgtataagctatttctataa 42849925  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 926399 - 926451
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataacac 127  Q
    ||||||||||||| || |||||||||| ||||||||||  |||||||||||||    
T  926399 ttattttgcagctaatagcataagcgcatatgaataagctatttctataacac 926451  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 31916463 - 31916507
Alignment:
Q  61 tttgaatagacaaattattttgcagcttatggcataagcgcttat 105  Q
    |||||||| |||| ||  |||||||||||||||||||||||||||    
T  31916463 tttgaataaacaacttcatttgcagcttatggcataagcgcttat 31916507  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 34522214 - 34522162
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataacac 127  Q
    |||||||||| ||||  |||||||||||||||||||||  |||||||| ||||    
T  34522214 ttattttgcaacttacagcataagcgcttatgaataagctatttctatgacac 34522162  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 44917694 - 44917642
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataacac 127  Q
    |||||||||||||||  |||||||||||||| |||||||  ||||||||||||    
T  44917694 ttattttgcagcttaaagcataagcgcttataaataagttgtttctataacac 44917642  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 41668268 - 41668218
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataac 125  Q
    ||||||||||||  || |||||||||||||||||||||  |||||||||||    
T  41668268 ttattttgcagccgatagcataagcgcttatgaataagctatttctataac 41668218  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 41668946 - 41668896
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataac 125  Q
    ||||||||||||  || |||||||||||||||||||||  |||||||||||    
T  41668946 ttattttgcagccgatagcataagcgcttatgaataagctatttctataac 41668896  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 33080740 - 33080688
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataacac 127  Q
    |||||||||||||||| |||||||| ||||||||||||   ||||||||||||    
T  33080740 ttattttgcagcttatagcataagcacttatgaataagctttttctataacac 33080688  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 17241407 - 17241359
Alignment:
Q  76 tattttgcagcttatggcataagcgcttatgaataagtcatttctataa 124  Q
    ||||| ||||||||| ||||||||||||||| |||||  ||||||||||    
T  17241407 tatttggcagcttatagcataagcgcttatgcataagctatttctataa 17241359  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 33527305 - 33527254
Alignment:
Q  75 ttattttgcagcttatggcataagcgcttatgaataagtcatttctataaca 126  Q
    |||||||||||||||  |||||||||||||||||||||  ||||||| ||||    
T  33527305 ttattttgcagcttagagcataagcgcttatgaataagctatttctaaaaca 33527254  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 2294827 - 2294860
Alignment:
Q  79 tttgcagcttatggcataagcgcttatgaataag 112  Q
    ||||| ||||||||||||||||||||||||||||    
T  2294827 tttgctgcttatggcataagcgcttatgaataag 2294860  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 6466218 - 6466152
Alignment:
Q  61 tttgaatagacaaattattttgcagcttatggcataagcgcttatgaataagtcatttctataacac 127  Q
    |||| ||| |||| || ||||||||||||| || |||||||||||||||||||  ||| ||||||||    
T  6466218 tttggataaacaacttcttttgcagcttatagcgtaagcgcttatgaataagttgtttatataacac 6466152  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 53422276 - 53422326
Alignment:
Q  77 attttgcagcttatggcataagcgcttatgaataagtcatttctataacac 127  Q
    |||||||||||||| |||||||| ||||||||||||  ||||||| |||||    
T  53422276 attttgcagcttatagcataagctcttatgaataagctatttctacaacac 53422326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 39886761 - 39886717
Alignment:
Q  61 tttgaatagacaaattattttgcagcttatggcataagcgcttat 105  Q
    |||| ||| ||||||||||||||||||||| |||||| |||||||    
T  39886761 tttggataaacaaattattttgcagcttatagcataaacgcttat 39886717  T

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