View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3793_high_5 (Length: 422)

Name: NF3793_high_5
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3793_high_5
NF3793_high_5
[»] chr2 (2 HSPs)
chr2 (8-408)||(16658461-16658861)
chr2 (119-214)||(12246464-12246559)
[»] chr1 (5 HSPs)
chr1 (22-250)||(4679506-4679737)
chr1 (8-271)||(29214530-29214798)
chr1 (8-262)||(29464821-29465079)
chr1 (92-216)||(52549957-52550084)
chr1 (154-280)||(15593987-15594116)
[»] chr7 (11 HSPs)
chr7 (13-383)||(13334311-13334689)
chr7 (13-328)||(10495317-10495635)
chr7 (8-328)||(8666323-8666646)
chr7 (8-195)||(1300495-1300685)
chr7 (8-250)||(8658345-8658590)
chr7 (20-328)||(8672022-8672333)
chr7 (43-185)||(3146314-3146459)
chr7 (20-252)||(8653421-8653662)
chr7 (43-235)||(8615712-8615907)
chr7 (20-192)||(8653229-8653404)
chr7 (43-250)||(8586682-8586892)
[»] chr4 (1 HSPs)
chr4 (20-268)||(9336844-9337095)
[»] chr6 (1 HSPs)
chr6 (44-147)||(28910462-28910568)
[»] scaffold0248 (1 HSPs)
scaffold0248 (306-357)||(17727-17779)


Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 16658461 - 16658861
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaag 107  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658461 gagagataccacgtggaagataagaaatttttacaaaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaag 16658560  T
Q  108 atgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16658561 atgtgaatttaaagctctcctctcaagaaattgagaagatcaacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaac 16658660  T
Q  208 agatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttctttattaaatctcaagtga 307  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16658661 agatgttcttgagtttcatctgaaggagatggagagcatgttgaagtacgttatagccaagactggctagttttatttttctttattaaatctcaagtga 16658760  T
Q  308 tgtcttgcttttgtaagtgctcaaacctttaggttgattgtcattatctagtagtattcaagttgatgatgatgttgggattgaacctgttacttaaact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658761 tgtcttgcttttgtaagtgctcaaacctttaggttgattgtcattatctagtagtattcaagttgatgatgatgttgggattgaacctgttacttaaact 16658860  T
Q  408 g 408  Q
    |    
T  16658861 g 16658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 12246464 - 12246559
Alignment:
Q  119 aagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgtt 214  Q
    |||||||| || |||||||| ||||||||| |   ||||||| |||||||||||| |||||||||| |||| ||| | ||   |||||||||||||    
T  12246464 aagctctcttcacaagaaatcgagaagatcgaatctgcaattgctgtggccacaaatttgcttgatgagaaaaaccagcaggttgaaatagatgtt 12246559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4679506 - 4679737
Alignment:
Q  22 ggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gatgtgaattta 118  Q
    |||||||||||||||||||  |||||| |||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||    ||||| ||||||    
T  4679506 ggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaattta 4679605  T
Q  119 aagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttctcg 218  Q
    |||||||| | | | |||| ||| |||||| || |||||||||| |||||||| |  |||||||||||||||||| |||| || |||||||||||||| |    
T  4679606 aagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataacgaacagaaagaaatagatgttcttg 4679705  T
Q  219 agtttcatctgaaggagatggagagcatgttg 250  Q
    ||  ||||||||||||| ||||||||||||||    
T  4679706 aggatcatctgaaggagttggagagcatgttg 4679737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 29214530 - 29214798
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaag 107  Q
    |||| |||||| |||||||||| | |||| |||  |||||||||||||| || |||||| |||| |||||||||||||||||| ||| ||||||||||||    
T  29214530 gagaaataccatgtggaagatatgcaattcttaaggaaggccaaggtaacgagtgcattagattcttgtgtttacaatatgaaaaatactttaaagaaag 29214629  T
Q  108 a----tgtgaatttaaagctct-cctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaat 202  Q
    |    ||| ||||| ||||||| || ||||||||| |||||||||| |||||| ||||||| | |     | |||||||||||||||||||||| | ||     
T  29214630 acggttgttaatttgaagctctccccctcaagaaagtgagaagatcaacaatgtaattactatcgttgtgaatttgcttgataagaataacaaagagaaa 29214729  T
Q  203 gaaatagatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagact 271  Q
     |||||||||||||  ||  ||||||  ||||| |||||||||||| ||| ||| ||||| ||||||||    
T  29214730 taaatagatgttctttagggtcatctcgaggagctggagagcatgtcgaaacaccttatatccaagact 29214798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 29465079 - 29464821
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttta---aaga 104  Q
    |||| |||||| |||||||||| | ||||  ||  ||||||||| ||||||| |||||| |||| |||||||||||||||||||||| | |||   ||||    
T  29465079 gagaaataccatgtggaagatatgcaattcgtaaggaaggccaatgtaatgagtgcattagattcttgtgtttacaatatgaagaatacattaaagaaga 29464980  T
Q  105 aagatgtgaatttaaagctc-tcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatg 203  Q
    | | ||| ||||| | |||| |||  |||||||| |||||||||| ||||||||||||||||  |    | |||||||||||||||||||||| | || |    
T  29464979 aggttgttaatttgatgctcttcccatcaagaaagtgagaagatcaacaatgcaattactgtctctgtgaatttgcttgataagaataacaaaaagaaag 29464880  T
Q  204 aaatagatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttata 262  Q
    ||| ||||||||| |||  ||||||| ||||| |||||||||||| ||| ||| |||||    
T  29464879 aaacagatgttcttgagggtcatctggaggagctggagagcatgtcgaaacaccttata 29464821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 52549957 - 52550084
Alignment:
Q  92 aatgctttaaagaaagatg---tgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataaga 188  Q
    ||||||||||||||||| |   | ||||| |||||||||||  ||||||||||||||||| |   ||||||| | |||||||| | |||| ||||| |||    
T  52549957 aatgctttaaagaaagaggatattaatttgaagctctcctcagaagaaattgagaagatcgaatctgcaattgcagtggccacgaatttggttgatcaga 52550056  T
Q  189 ataacaaacaaaatgaaatagatgttct 216  Q
    | ||| | |||  |||||||||||||||    
T  52550057 aaaaccagcaagttgaaatagatgttct 52550084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 15594116 - 15593987
Alignment:
Q  154 tgcaattactgtggccacaagtttgcttgata---agaataacaaacaaaatgaaatagatgttctcgagtttcatctgaaggagatggagagcatgttg 250  Q
    ||||||||| ||||| |||| |||||||||||   |||||||| | || |||||| |||||||||| |||  | || |||||||| | |||||||||||     
T  15594116 tgcaattacagtggctacaaatttgcttgataagaagaataaccagcataatgaagtagatgttcttgagggtaatttgaaggagctcgagagcatgttc 15594017  T
Q  251 aagcacgttatagccaagactggctagttt 280  Q
     |  || || ||| ||||||||||||||||    
T  15594016 gaaaaccttgtagtcaagactggctagttt 15593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 13334311 - 13334689
Alignment:
Q  13 ataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaa---agat 109  Q
    |||||| || |||||||||||||| |||  |||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||   |||     
T  13334311 ataccatgtcgaagataagaaattcttaaggaaggccaaggtaatgaatgcattagattcttgtgtttacaatatgaagaacactttaaagaagaaagac 13334410  T
Q  110 gtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatag 209  Q
    || ||| | |  |||||| ||||||||||| ||||||||  ||||||||||||| | || |  | |||||||||||||||||| ||| | || |||||||    
T  13334411 gttaatctcatcctctcccctcaagaaattaagaagatcagcaatgcaattacttttgctatgaatttgcttgataagaataataaagagaaagaaatag 13334510  T
Q  210 atgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttct-ttattaaatctcaagtgat 308  Q
    ||||||| |||  ||||||  ||||| |||||||||||| ||| ||| | ||| | ||||||   || ||| |||||||| | || | || | |||||||    
T  13334511 atgttcttgagggtcatctcgaggagctggagagcatgtcgaaacacctgatatcaaagact-aataattttatttttctgtgataagatttgaagtgat 13334609  T
Q  309 gtcttgcttttgtaagtgct-----caaacctttaggttgattgtcattatctagtagtattcaagttgatgatgatgtt 383  Q
    |||||||||||| |||||||     ||||| ||||| || ||| |||||||||| ||| ||| ||||| ||||| |||||    
T  13334610 gtcttgcttttgaaagtgctgaatgcaaacttttagttttattatcattatctaatagcattgaagtttatgataatgtt 13334689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 10495317 - 10495635
Alignment:
Q  13 ataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gat 109  Q
    |||||| || ||||||| |||||| |||  ||||||||||||||||| |||||| |||| |||||||||||||||||||||  ||||||||||    ||     
T  10495317 ataccatgtcgaagatatgaaattcttaaggaaggccaaggtaatgagtgcattagattcttgtgtttacaatatgaagaacactttaaagaagaaggac 10495416  T
Q  110 gtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatag 209  Q
    || ||| | |  |||||| ||||||||||||||||||||  ||||||||||||| | || |  | |||||||||||||| ||| ||| | ||  ||||||    
T  10495417 gttaatctcatcctctccgctcaagaaattgagaagatcagcaatgcaattacttttgctatgaatttgcttgataagagtaataaagagaaaaaaatag 10495516  T
Q  210 atgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttcttt-attaaatctcaagtgat 308  Q
    ||||||| |||  ||||||| ||||| |||||||||||| ||| ||| ||||| ||||||||   || ||| |||||||||| || | || | ||||||     
T  10495517 atgttcttgagaatcatctggaggagctggagagcatgtcgaaacaccttatatccaagact-aataattttatttttctttgataagatttaaagtgaa 10495615  T
Q  309 gtcttgcttttgtaagtgct 328  Q
    |||||||||||| |||||||    
T  10495616 gtcttgcttttgaaagtgct 10495635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 8666646 - 8666323
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa- 106  Q
    |||| |||||| |||||||||| | ||||||||   | |||||||||||||  || ||| |||| ||||||||||||||||||||| |||||||||||      
T  8666646 gagaaataccatgtggaagatatgcaatttttaagaagggccaaggtaatgtgtgaattagattcttgtgtttacaatatgaagaaggctttaaagaaga 8666547  T
Q  107 --gatgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatga 204  Q
      ||||| ||| | |  |||||| ||||||||||||  |||||| |||||||||||||||| || |    |||||||||||||||||| ||| | || ||    
T  8666546 aggatgttaatctgattctctcccctcaagaaattgcaaagatcaacaatgcaattactgttgctatggatttgcttgataagaataaaaaagagaaaga 8666447  T
Q  205 aatagatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttctt-tattaaatctcaa 303  Q
    |||||||||||| |||  | ||||| ||||| ||||||| |||| ||| ||| ||||| ||||| ||   || ||| |||||||||  || | || | ||    
T  8666446 aatagatgttcttgagggttatctggaggagctggagagaatgtcgaaacaccttatatccaaggct-aataattttatttttcttggataagattttaa 8666348  T
Q  304 gtgatgtcttgcttttgtaagtgct 328  Q
    ||||||||||||||||| |||||||    
T  8666347 gtgatgtcttgcttttgaaagtgct 8666323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 1300685 - 1300495
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttta---aaga 104  Q
    |||| ||||||| ||||||||||||| ||||||  ||||||||  ||||||||||  ||||||||||||||||||||  |||||||||| |||   ||||    
T  1300685 gagaaataccacatggaagataagaagtttttaaagaaggccacagtaatgaatgatttggattattgtgtttacaaagtgaagaatgccttaaagaaga 1300586  T
Q  105 aagatgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaa 195  Q
    | ||||| |||||||| ||||||  | ||||||  || |||||| ||||||||||||| ||  | ||||| ||||||||||||||||||||    
T  1300585 aggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaacaatgcaattaccgtcacaacaagcttgcttgataagaataacaa 1300495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 8658590 - 8658345
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttt---aaaga 104  Q
    ||||||||||   ||||||||||| ||||||||  ||||||||| ||||||||||  ||||||||||||||||||||  |||||||||| ||   |||||    
T  8658590 gagagataccgtatggaagataaggaatttttaaggaaggccaaagtaatgaatgatttggattattgtgtttacaaagtgaagaatgcgttaaaaaaga 8658491  T
Q  105 aagatgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatga 204  Q
    | ||||| |||||||| ||||||  |  |||||  || |||||| ||||||||| |||  |||| ||||  |||||| || |||||||||||||  |  |    
T  8658490 aggatgttaatttaaacctctcccgtggagaaagggaaaagatcaacaatgcaactaccttggcaacaaacttgcttcatgagaataacaaacagcagaa 8658391  T
Q  205 aatagatgttctcgagtttcatctgaaggagatggagagcatgttg 250  Q
    |||||||||| | |||  ||||||||||||| |||| | |||||||    
T  8658390 aatagatgttgttgaggatcatctgaaggagctggaaatcatgttg 8658345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 8672022 - 8672333
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttta---aagaaagatgtgaatt 116  Q
    |||||||||| | ||||||||   | |||||||||||||  |||||| |||| ||||||||||||||||||||| ||||||   |||||  |||| |||     
T  8672022 gtggaagatatgcaatttttaagaagggccaaggtaatgtgtgcattagattcttgtgtttacaatatgaagaacgctttagagaagaacaatgttaatc 8672121  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttct 216  Q
    | |  |||||| ||||||||||||  |||||| |||||||||||||||| || |    ||||||||||| |||||| ||| | || ||||||||||||||    
T  8672122 tgattctctcccctcaagaaattgcaaagatcaacaatgcaattactgttgctatggatttgcttgatatgaataaaaaagagaaagaaatagatgttct 8672221  T
Q  217 cgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttctt-tattaaatctcaagtgatgtcttgc 315  Q
     |||  | ||||| ||||| ||||||| |||| ||| ||| ||||| ||||| ||   || ||| |||||||||  || | || | ||||||||||||||    
T  8672222 tgagggttatctggaggagctggagagaatgtcgaaacaccttatatccaaggct-aataattttatttttcttggataagattttaagtgatgtcttgc 8672320  T
Q  316 ttttgtaagtgct 328  Q
    ||||| |||||||    
T  8672321 ttttgaaagtgct 8672333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 3146459 - 3146314
Alignment:
Q  43 gaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaa---agaaagatgtgaatttaaagctctcctctcaagaaatt 139  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||   |||| ||||||||| |||| |||||||||||||||| |    
T  3146459 gaaggccaatgtaatgaatgcattagattattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtgaatataaatctctcctctcaagaaaat 3146360  T
Q  140 gagaagatctacaatgcaattactgtggccacaagtttgcttgata 185  Q
    || |||||| |   |||||| ||   |||||||||||| |||||||    
T  3146359 gacaagatcaattctgcaatcacaaaggccacaagtttacttgata 3146314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 8653662 - 8653421
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaa---gaaagatgtgaatt 116  Q
    |||||||||| |||||||||   ||||||||| ||||| |  |||||||||| ||||||||||||||| |||| |||||| ||   ||| |||||  ||     
T  8653662 gtggaagatatgaaatttttgaggaaggccaaagtaataagcgcattggattcttgtgtttacaatataaagagtgctttgaatatgaaggatgttgatc 8653563  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttg------ataagaataacaaacaaaatgaaataga 210  Q
    |||  |||||| ||||||||| |||| ||||| |||||||||||| ||| ||||  | |||||| |      ||||||||||| |||| |  ||||||||    
T  8653562 taatcctctcccctcaagaaagtgagcagatcaacaatgcaattattgttgccatgaatttgctcgaaatgaataagaataaccaacatatagaaataga 8653463  T
Q  211 tgttctcgagtttcatctgaaggagatggagagcatgttgaa 252  Q
    |||||| |||  |||||| ||||||||| | |||||||||||    
T  8653462 tgttcttgagcatcatcttaaggagatgaacagcatgttgaa 8653421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 8615907 - 8615712
Alignment:
Q  43 gaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gatgtgaatttaaagctctcctctcaagaaatt 139  Q
    |||||||||||||||||||| ||| ||| | ||  |||||||  ||| ||||||| |||||||    |||||   ||||||||| || |||||| || ||    
T  8615907 gaaggccaaggtaatgaatgaattagatgactgcatttacaagttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaaagtt 8615808  T
Q  140 gagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttctcgagtttcatctgaaggag 235  Q
    || || ||| ||||||||||||||||||| |||| ||||||||||| ||||||| | || | |||| |||| ||||||||   |||||||||||||    
T  8615807 gaaaatatcaacaatgcaattactgtggctacaaatttgcttgataggaataaccagcagagtgaagtagaagttctcgaagatcatctgaaggag 8615712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 8653404 - 8653229
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaa---gaaagatgtgaatt 116  Q
    |||||||||| ||||||||||  |||||||| |||||||| ||||||||||| ||| ||| | ||||| | ||||||||| ||   ||| ||||| |||     
T  8653404 gtggaagatatgaaatttttaaggaaggccacggtaatgagtgcattggattcttgcgttaagaatataacgaatgctttgaatacgaaggatgttaatc 8653305  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataa 192  Q
    |||   ||||| ||||||||| ||| |||||| |||||||||||  || |||||  | ||||||||||||||||||    
T  8653304 taatcatctcccctcaagaaagtgaaaagatcaacaatgcaatttttggggccatgaatttgcttgataagaataa 8653229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 8586682 - 8586892
Alignment:
Q  43 gaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gatgtgaatttaaagctctcctctcaagaaatt 139  Q
    |||||| |||||||||||| |||| ||| |||||||||||||  | | ||||||| |||||||    ||| | ||  |||||  ||| |||||| || ||    
T  8586682 gaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttctcaaaaagtt 8586781  T
Q  140 gagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttctcgagtttcatctgaaggagatgg 239  Q
     | |||||| |  ||||||||||  |||| |||| ||||||||||||||||||| |  | ||||| ||||||||||| | |  ||||||||||||| | |    
T  8586782 aaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttg 8586881  T
Q  240 agagcatgttg 250  Q
    |||||||||||    
T  8586882 agagcatgttg 8586892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 9336844 - 9337095
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaaga---tgtgaatt 116  Q
    |||||||||| | ||||||||   | |||||||||||||  |||||| |||| ||||||||||||||||||||| |||||||||||  |   ||| |||     
T  9336844 gtggaagatatgcaatttttaagaagggccaaggtaatgtgtgcattagattcttgtgtttacaatatgaagaacgctttaaagaagaacaatgttaatc 9336943  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttct 216  Q
    | |  ||| |  |||||||||||||||||||| |||||||||||||||| || |  | |||||||||||||||||||||| | || ||||||||||||||    
T  9336944 tgattctcacgcctcaagaaattgagaagatcaacaatgcaattactgttgctatgaatttgcttgataagaataacaaagagaaagaaatagatgttct 9337043  T
Q  217 cgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaag 268  Q
     |||  ||||||| ||||  | |||||||||| ||||||| ||||| |||||    
T  9337044 tgagggtcatctggaggatctagagagcatgtcgaagcaccttatatccaag 9337095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 28910568 - 28910462
Alignment:
Q  44 aaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaa---gaaagatgtgaatttaaagctctcctctcaagaaattg 140  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||||||| ||||||   ||| |||   ||| ||||||||||||||||||||| ||    
T  28910568 aaggccaatgtaatgaatgcattacattattgtgtttacaagatgaagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaatg 28910469  T
Q  141 agaagat 147  Q
    | |||||    
T  28910468 acaagat 28910462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 17727 - 17779
Alignment:
Q  306 gatgtcttgctttt-gtaagtgctcaaacctttaggttgattgtcattatcta 357  Q
    |||||||||||||| | ||||||||||| ||||||||| ||| ||||||||||    
T  17727 gatgtcttgcttttagcaagtgctcaaatctttaggttaattatcattatcta 17779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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