View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3793_high_8 (Length: 411)

Name: NF3793_high_8
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3793_high_8
NF3793_high_8
[»] chr6 (3 HSPs)
chr6 (12-395)||(31610015-31610398)
chr6 (134-213)||(6983817-6983896)
chr6 (225-271)||(3436215-3436261)
[»] chr5 (4 HSPs)
chr5 (142-263)||(5029481-5029603)
chr5 (206-271)||(9042541-9042607)
chr5 (137-220)||(43135775-43135858)
chr5 (127-175)||(35458796-35458844)
[»] chr2 (3 HSPs)
chr2 (137-271)||(35698705-35698840)
chr2 (225-265)||(14802198-14802237)
chr2 (224-269)||(15361291-15361336)
[»] chr3 (2 HSPs)
chr3 (129-214)||(54581497-54581582)
chr3 (225-268)||(26828742-26828785)
[»] chr8 (1 HSPs)
chr8 (231-266)||(24257338-24257373)


Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 31610015 - 31610398
Alignment:
Q  12 aaaggcagaagcgataagaaattaccctattttcatagttagaaatactataaaagtgacaaactaactcaaatgaatctagcccaatcatacatttgat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31610015 aaaggcagaagcgataagaaattaccctattttcatagttagaaatactataaaagtgacaaactaactcaaatgaatctagcccaatcatacatttgat 31610114  T
Q  112 tagcaatatgtatccacacttatgttgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaat 211  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  31610115 tagcactatgtatccacatttatgttgtgtttggaatagcggtggaaagccaccaaatccacgtctatacaaaagctagaatttgcagttttgaaaaaat 31610214  T
Q  212 cacatcaaaaattattggaaagtgagaaacatgatgcaaactccaatccaaacactcacttagtaagcatacatctctccaccatgtggaagaatggtat 311  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  31610215 cacatcaaaagttattggaaagtgagaaacatgatgcgaactccaatccaaacactcacttagtaagcatacatctctccaccatgtcgaagaatgatat 31610314  T
Q  312 ggaaagcaaaatccaccaaaaccttttttgatagagttgattatgatatgggaggcttcatctccacttagccatagtattaac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31610315 ggaaagcaaaatccaccaaaaccttttttgatagagttgattatgatatgggaggcttcatctccacttagccatagtattaac 31610398  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 6983817 - 6983896
Alignment:
Q  134 tgttgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatca 213  Q
    |||||||||||||||||||||| | || ||  |||| |||||| | || ||||||||||||| |||||||| ||||||||    
T  6983817 tgttgtgtttggaatagcggtgaacagtcattaaacgcacgtctaaactaaagctagaattttcagttttgtaaaaatca 6983896  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 3436215 - 3436261
Alignment:
Q  225 attggaaagtgagaaacatgatgcaaactccaatccaaacactcact 271  Q
    ||||| ||||||||| ||| ||| |||||||||||||||||||||||    
T  3436215 attgggaagtgagaagcattatggaaactccaatccaaacactcact 3436261  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 5029481 - 5029603
Alignment:
Q  142 ttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcacatcaaaaat-tattggaaagtgagaaa 240  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||   || |||| |||||||||||||||| | ||||||||| |||||||    
T  5029481 ttggaatagcggtggaaagccagcaaacccacgtccacacaaaagctagaattcatagctttgtaaaaatcacatcaaaagtgtattggaaattgagaaa 5029580  T
Q  241 catgatgcaaactccaatccaaa 263  Q
    |||||||||||||||| ||||||    
T  5029581 catgatgcaaactccattccaaa 5029603  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 9042541 - 9042607
Alignment:
Q  206 aaaaatcacatcaaaa-attattggaaagtgagaaacatgatgcaaactccaatccaaacactcact 271  Q
    |||||||||||||||| |  ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9042541 aaaaatcacatcaaaagaccattgggaagtgagaaacatgatgcaaactccaatccaagcactcact 9042607  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 43135775 - 43135858
Alignment:
Q  137 tgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcacatcaaa 220  Q
    ||||||||||||||||||||| | ||||||||| |||||| | || ||||||||||||| ||| || |  |||||||| |||||    
T  43135775 tgtgtttggaatagcggtggacaaccaccaaacacacgtctagactaaagctagaatttccagcttcgttaaaatcacgtcaaa 43135858  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 35458796 - 35458844
Alignment:
Q  127 acacttatgttgtgtttggaatagcggtggaaagccaccaaacccacgt 175  Q
    |||||||||||||||||| ||| |||||||| |||||| |||| |||||    
T  35458796 acacttatgttgtgtttgaaattgcggtggatagccactaaacgcacgt 35458844  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 35698705 - 35698840
Alignment:
Q  137 tgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcacatcaaaaat-tattggaaagtg 235  Q
    ||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||  |  |||  ||||||||||| |||| |  |||||||||||    
T  35698705 tgtgtgtggaatagcggtggaaagccaccaaacccacgcccacacaaacgctagaatttctaactttctaaaaatcacattaaaagtacattggaaagtg 35698804  T
Q  236 agaaacatgatgcaaactccaatccaaacactcact 271  Q
    ||||| ||||  || |||||||||||||||||||||    
T  35698805 agaaatatgacacagactccaatccaaacactcact 35698840  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 14802237 - 14802198
Alignment:
Q  225 attggaaagtgagaaacatgatgcaaactccaatccaaaca 265  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  14802237 attggaaagtgagaaacatgatgcaaac-ccaatccaaaca 14802198  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 15361336 - 15361291
Alignment:
Q  224 tattggaaagtgagaaacatgatgcaaactccaatccaaacactca 269  Q
    ||||| ||||||| ||| |||||||||||||||||| |||||||||    
T  15361336 tattgaaaagtgaaaaatatgatgcaaactccaatcaaaacactca 15361291  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 54581497 - 54581582
Alignment:
Q  129 acttatgttgtgtttggaatagcggtggaaagccaccaaacccacgtccatacaaaagctagaatttgcagttttgaaaaaatcac 214  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||| || ||||||||||||| ||| |||| |||||||||    
T  54581497 acttatgttgtgtttggaatagcggtggacagccaccaaatacacgtccagactaaagctagaatttccagctttgtaaaaatcac 54581582  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 26828785 - 26828742
Alignment:
Q  225 attggaaagtgagaaacatgatgcaaactccaatccaaacactc 268  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  26828785 attggaaagtgagaaacatgatgcaaactcgaatccaaacactc 26828742  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 24257338 - 24257373
Alignment:
Q  231 aagtgagaaacatgatgcaaactccaatccaaacac 266  Q
    ||||||||||||||||||||||||||||||||||||    
T  24257338 aagtgagaaacatgatgcaaactccaatccaaacac 24257373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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