View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3793_low_1 (Length: 824)
Name: NF3793_low_1
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 802; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 802; E-Value: 0
Query Start/End: Original strand, 1 - 818
Target Start/End: Complemental strand, 44225217 - 44224400
Alignment:
| Q |
1 |
tttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225217 |
tttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaag |
44225118 |
T |
|
| Q |
101 |
agagtatttgctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctcttttataaaagtgaaatagaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44225117 |
agagtatttgctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctcttttatataagtgaaatagaaattc |
44225018 |
T |
|
| Q |
201 |
tttttcatttatacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225017 |
tttttcatttatacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatga |
44224918 |
T |
|
| Q |
301 |
cactgttttttcggactgagatgcatcgcaatgatcaggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgtttaatgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44224917 |
cactgttttttcggactgagatgcatcgcaatgatcaggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgtttaatgg |
44224818 |
T |
|
| Q |
401 |
aatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgctattccttcgtgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44224817 |
aatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgctattccttcgtgg |
44224718 |
T |
|
| Q |
501 |
attctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaaaagaagt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44224717 |
attctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaaaagaagt |
44224618 |
T |
|
| Q |
601 |
ttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatgatgtgaggtcttgaatttttggca |
700 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44224617 |
ttcttttattctgtttggagaatgtagtattgaacgtcacttctactatctagtttgcatttgtgtgttacttatgatgtgaggtcttgaatttttggca |
44224518 |
T |
|
| Q |
701 |
ggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggtagaaacatgattgttgccaa |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44224517 |
ggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggtagaaacatgattgttgccaa |
44224418 |
T |
|
| Q |
801 |
tacatttgggtcctttgc |
818 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
44224417 |
tacatttgggtcctttgc |
44224400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 1 - 818
Target Start/End: Complemental strand, 44213056 - 44212234
Alignment:
| Q |
1 |
tttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44213056 |
tttccataccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaag |
44212957 |
T |
|
| Q |
101 |
agagtatttgctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttt------ataaaagtgaaatag |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |||||| |
|
|
| T |
44212956 |
agagtatttgctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttgtaatctatcccgctcttttttataaatataagt-aaatag |
44212858 |
T |
|
| Q |
195 |
aaattctttttcatttatacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatag |
294 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44212857 |
attatctttttcatttatacattcatgaccatgattttctgtgacataacggttttctcttcatgctttgtttttcagcttttcatcatggcattgattg |
44212758 |
T |
|
| Q |
295 |
caatgacactgttttttcggactgagatgcatcgcaatgatcaggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgtt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44212757 |
caatgacactgttttttcggactgagatgcatcgcgatgatcaggatgacgcaggtgtttatgctggtgctttgtttttcacactagtaacgatgatgtt |
44212658 |
T |
|
| Q |
395 |
taatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgctattcct |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44212657 |
taatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgctattcct |
44212558 |
T |
|
| Q |
495 |
tcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaaa |
594 |
Q |
| |
|
|| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44212557 |
tcatggattctcaagattcccgtctcattagtggaagtttctctctgggtgtttcttacctactatgttattggatttgatccaaatgttgggaggtaaa |
44212458 |
T |
|
| Q |
595 |
agaagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatgatgtgaggtcttgaattt |
694 |
Q |
| |
|
| ||||| |||||||||||||||||| ||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
44212457 |
ataagttgcttttattctgtttggagcatgtagtattgaatgtcagttctactgtctagtttgtatttgtatgttactaatgatgtgaggtcttgaattc |
44212358 |
T |
|
| Q |
695 |
ttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggtagaaacatgattgt |
794 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44212357 |
taggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggtagaaacatgattgt |
44212258 |
T |
|
| Q |
795 |
tgccaatacatttgggtcctttgc |
818 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44212257 |
tgccaatacatttgggtcctttgc |
44212234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 818
Target Start/End: Complemental strand, 44236031 - 44235215
Alignment:
| Q |
1 |
tttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44236031 |
tttccgtaccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaag |
44235932 |
T |
|
| Q |
101 |
agagtatttgctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttt-ataaaagtga---aatagaa |
196 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | | |||| |
|
|
| T |
44235931 |
agagtatttgctcatgaaaagaaattcctttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttttataaatataagcaagtagat |
44235832 |
T |
|
| Q |
197 |
attctttttcatttatacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagca |
296 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44235831 |
attctttttcatttatacattcatcaccatgattttctgtgacataacggtttgttcttcatgctttgtttttcagcttttcatcatggcattgatagca |
44235732 |
T |
|
| Q |
297 |
atgacactgttttttcggactgagatgcatcgcaatgatcaggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgttta |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44235731 |
atgacactgttttttcggactgagatgcatcgcaataatcaggatgatgcgggtgtttatgctggtgctttgtttttcacactggtaacgatgatgttta |
44235632 |
T |
|
| Q |
397 |
atggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgctattccttc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44235631 |
atggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgctattccttc |
44235532 |
T |
|
| Q |
497 |
gtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaaaag |
596 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44235531 |
gtggattctcaagattcccatctcattagtggaagtttctctatgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaaaag |
44235432 |
T |
|
| Q |
597 |
aagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatgatgtgaggtcttgaattttt |
696 |
Q |
| |
|
|| ||||||||||||||||||||| ||| |||| ||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
44235431 |
aaatttcttttattctgtttggagcatgtggtattgaatgccactt---ctatcttgtttgcatttg-atgttacttatgatgtgaggtcttgaa-tttt |
44235337 |
T |
|
| Q |
697 |
ggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggtagaaacatgattgttg |
796 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44235336 |
ggcaggatgttcaagcagttccttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggtagaaacatgattgttg |
44235237 |
T |
|
| Q |
797 |
ccaatacatttgggtcctttgc |
818 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44235236 |
ccaatacatttgggtcctttgc |
44235215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 360 - 584
Target Start/End: Original strand, 2885053 - 2885277
Alignment:
| Q |
360 |
ggtgctttgtttttcacactagtaacgatgatgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagacc |
459 |
Q |
| |
|
|||||||| |||||| || |||| | ||| ||||||||||||||| | || |||| ||||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
2885053 |
ggtgctttatttttcgcagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgctaagcttcctagtttctacaagcaaagagacc |
2885152 |
T |
|
| Q |
460 |
ttctattttatccctcatgggcatatgctattccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctacta |
559 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| ||| | ||||| ||||||||||| || | || |||||||| || |||||| ||||| ||||| || |
|
|
| T |
2885153 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttgctgcttgggtttttctcacctatta |
2885252 |
T |
|
| Q |
560 |
tgttattggatttgatccaaatgtt |
584 |
Q |
| |
|
|| || ||||| |||||||||||| |
|
|
| T |
2885253 |
cgtaataggattcgatccaaatgtt |
2885277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 390 - 584
Target Start/End: Complemental strand, 2899448 - 2899254
Alignment:
| Q |
390 |
atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta |
489 |
Q |
| |
|
|||||||||||| || |||| |||| ||||||||||| ||||||||| || |||||||||| |||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
2899448 |
atgtttaatggattggctgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagaccttctgttttttccttcatgggcatatgcta |
2899349 |
T |
|
| Q |
490 |
ttccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaatgtt |
584 |
Q |
| |
|
| ||| | ||||| ||||||||||| || |||| |||||||| || ||||||| || || ||||| ||||| || ||||| ||||| |||||| |
|
|
| T |
2899348 |
tacctacatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatccgaatgtt |
2899254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 2884721 - 2884858
Alignment:
| Q |
9 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
108 |
Q |
| |
|
|||||||||||| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
2884721 |
ccatttgacaagtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatt |
2884820 |
T |
|
| Q |
109 |
tgctcatgaaaaggaattcgtttgtttacatcttcaag |
146 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
2884821 |
tgcttatgaaaagaaattcctttgtttacatcttcaag |
2884858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 2899839 - 2899702
Alignment:
| Q |
9 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
108 |
Q |
| |
|
|||||||||||| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
2899839 |
ccatttgacaagtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatt |
2899740 |
T |
|
| Q |
109 |
tgctcatgaaaaggaattcgtttgtttacatcttcaag |
146 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
2899739 |
tgcttatgaaaaggaattcctttgtttacatcttcaag |
2899702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 2874853 - 2874971
Alignment:
| Q |
9 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
108 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
|
|
| T |
2874853 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
2874952 |
T |
|
| Q |
109 |
tgctcatgaaaaggaattc |
127 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
2874953 |
tgcttatgaaaagaaattc |
2874971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 778 - 818
Target Start/End: Original strand, 2885507 - 2885547
Alignment:
| Q |
778 |
ggtagaaacatgattgttgccaatacatttgggtcctttgc |
818 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2885507 |
ggtagaaacatgattgtggccaatacatttgggtcctttgc |
2885547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 593
Target Start/End: Complemental strand, 39549563 - 39549496
Alignment:
| Q |
526 |
tggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaa |
593 |
Q |
| |
|
|||||||| || ||||||| || |||||||||||||| ||||| || |||||| || ||||||||||| |
|
|
| T |
39549563 |
tggaagttgctgtttgggtattccttacctactatgtcattggtttcgatccatatattggaaggtaa |
39549496 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 593
Target Start/End: Complemental strand, 39566480 - 39566425
Alignment:
| Q |
538 |
tttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaa |
593 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||| || ||| ||||||| |
|
|
| T |
39566480 |
tttgggtgttccttacctactatgtcattggttttgatccatatattgaaaggtaa |
39566425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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