View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3793_low_11 (Length: 333)

Name: NF3793_low_11
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3793_low_11
NF3793_low_11
[»] chr3 (13 HSPs)
chr3 (22-318)||(20035599-20035895)
chr3 (25-318)||(19839219-19839512)
chr3 (22-316)||(19956912-19957203)
chr3 (26-269)||(19832696-19832939)
chr3 (24-181)||(19819460-19819617)
chr3 (93-226)||(20033401-20033534)
chr3 (71-251)||(26647897-26648077)
chr3 (200-318)||(19813109-19813227)
chr3 (24-176)||(19813224-19813376)
chr3 (110-318)||(19951950-19952158)
chr3 (24-263)||(20006255-20006491)
chr3 (169-244)||(20007415-20007490)
chr3 (169-226)||(26654066-26654123)
[»] chr8 (2 HSPs)
chr8 (140-251)||(22685454-22685565)
chr8 (161-194)||(22655478-22655511)
[»] chr1 (1 HSPs)
chr1 (193-270)||(1718094-1718171)
[»] chr5 (1 HSPs)
chr5 (98-157)||(27472712-27472771)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 20035599 - 20035895
Alignment:
Q  22 agggaacaagagtgttattttttggaggaagacttgcagaaccatcaagatcaattttttgattagctcttaaacaatcaggaacataattttcataagg 121  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20035599 agggaacaagaatggtattttttggaggaagacttgcagaaccatcaacatcaattttttgattagctcttaaaaaatcaggaacataattttcataagg 20035698  T
Q  122 aacatcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaat 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20035699 aacatcaacataaaatttatcaaccttcctagttttagcttttgacccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaat 20035798  T
Q  222 ccaggctgaacacaaacttcaataccacttttatttaattttcctacatgtggtctgtgttttcttgaactggaacttcttttccgacgcacaatat 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20035799 ccaggctgaacacaaacttcaataccacttttgtttaattttcctacatgtggtctgtgttgtcttgaactggaacttcttttccgacgcacaatat 20035895  T

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Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 19839512 - 19839219
Alignment:
Q  25 gaacaagagtgttattttttggaggaagacttgcagaaccatcaagatcaattttttgattagctcttaaacaatcaggaacataattttcataaggaac 124  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||  |||||| ||||||| |||||| ||||||||| ||||| ||||||||||||||||    
T  19839512 gaacaagaatgttatgttttggaggaagacttgaagaaccatcagcatcaatattttgatcagctctcaaacaatcatgaacagaattttcataaggaac 19839413  T
Q  125 atcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatcca 224  Q
    ||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  19839412 atcaacacaaaattcattaaccttcctagttttagcttttgagccatcatcacaaacttttccaaaagtaagagtatcaaccagattgggagaaaatcca 19839313  T
Q  225 ggctgaacacaaacttcaataccacttttatttaattttcctacatgtggtctgtgttttcttgaactggaacttcttttccgacgcacaatat 318  Q
    || ||||||||||| |||||||||||| | || || ||||||||||| |||||  | || |||||||| |||||||| |||| |||||||||||    
T  19839312 ggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttctcttccaacgcacaatat 19839219  T

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Target: chr3; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 19957203 - 19956912
Alignment:
Q  22 agggaacaagagtgttattttttggaggaagacttgcagaaccatcaagatcaattttttgattagctcttaaacaatcaggaacataattttcataagg 121  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||  || ||| | ||||| |||||| |||   ||| ||||| |||||||||||||    
T  19957203 agggaacaagagtgttatgttttggaggaagacttgaagaaccatcagcataaatatcttgatcagctctcaaa---tcatgaacagaattttcataagg 19957107  T
Q  122 aacatcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaat 221  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  19957106 aacatcaacataaaatttatcgaccttcctagttttagcttttgagccatcatcacaaacattttcaaaagtaagagtatcaacaagattgggagaaaat 19957007  T
Q  222 ccaggctgaacacaaacttcaataccacttttatttaattttcctacatgtggtctgtgttttcttgaactggaacttcttttccgacgcacaat 316  Q
    ||||| ||||||||||| || ||||||||| | || || |||||||| || |||||  | || |||||||| |||||||| ||||||||||||||    
T  19957006 ccaggttgaacacaaacctccataccacttctgttaaactttcctacgtgaggtctacgcttccttgaacttgaacttctcttccgacgcacaat 19956912  T

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Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 19832939 - 19832696
Alignment:
Q  26 aacaagagtgttattttttggaggaagacttgcagaaccatcaagatcaattttttgattagctcttaaacaatcaggaacataattttcataaggaaca 125  Q
    |||||||||||||| ||||||||||||||||| |||||||||   |||||| ||||||| |||||| ||||||||| ||||| |||||||||||||||||    
T  19832939 aacaagagtgttatgttttggaggaagacttgaagaaccatcggcatcaatattttgatcagctctgaaacaatcatgaacagaattttcataaggaaca 19832840  T
Q  126 tcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatccag 225  Q
    ||||||||||||| |||||||||||||||| | |  |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  19832839 tcaacataaaattcatcaaccttcctagttattgcctttgagccatcatcacaaactttttcaaaaataggagtatcaacaagattgggagaaaatccag 19832740  T
Q  226 gctgaacacaaacttcaataccacttttatttaattttcctaca 269  Q
    |  || ||  | ||||||||||||||  ||| || |||||||||    
T  19832739 gtagagcatcagcttcaataccacttgcattaaaatttcctaca 19832696  T

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Target: chr3; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 19819617 - 19819460
Alignment:
Q  24 ggaacaagagtgttattttttggaggaagacttgcagaaccatcaagatcaattttttgattagctcttaaacaatcaggaacataattttcataaggaa 123  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||  |||||| ||||||| |||||| ||||||||| ||||| |||||||||||||||    
T  19819617 ggaacaagagtgttatgttttggaggaagacttgaagaagcatcagcatcaatattttgatcagctctcaaacaatcatgaacagaattttcataaggaa 19819518  T
Q  124 catcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaac 181  Q
    |||||||| ||||||  | |||||||||||||||||  ||||||||||||||||||||    
T  19819517 catcaacacaaaattcgttaaccttcctagttttagaatttgagccatcatcacaaac 19819460  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 20033401 - 20033534
Alignment:
Q  93 aaacaatcaggaacataattttcataaggaacatcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaa 192  Q
    ||||||| | ||||| ||||||||||||||||||||  |||||  | ||||| |||||||||||||| |||||| |||||||||||||  |||||||| |    
T  20033401 aaacaattatgaacagaattttcataaggaacatcagtataaagatcatcaatcttcctagttttagattttgaaccatcatcacaaaattttccaaaca 20033500  T
Q  193 taagagtatcaacaagattgggagaaaatccagg 226  Q
    ||||||| |||||||||||||||| |||||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccagg 20033534  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 26648077 - 26647897
Alignment:
Q  71 atcaattttttgattagctcttaaacaatcaggaacataattttcataaggaacatcaacataaaatttatcaaccttcctagttttaggttttgagcca 170  Q
    |||||| |||| || |||| | ||||||| | |||||  ||||||||||||||||||  ||||||| | | |||||||||||||||||| ||| || |||    
T  26648077 atcaatattttcatcagctttcaaacaattatgaacagcattttcataaggaacatcggcataaaaatcagcaaccttcctagttttagttttggaacca 26647978  T
Q  171 tcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccactt 251  Q
    | || |||||  ||||||||||||||||| |||||||||||||||| ||| |||||  |||||| ||| ||| ||||||||    
T  26647977 ttataacaaaattttccaaaaataagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccactt 26647897  T

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Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 19813227 - 19813109
Alignment:
Q  200 atcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttatttaattttcctacatgtggtctgtgttttcttgaactggaactt 299  Q
    ||||||||||||||||| |||| ||||  |||||  | |  ||||||||||| | |  ||||||||||||||||||| ||||||||||||||||||||||    
T  19813227 atcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacatgtggtcggtgttttcttgaactggaactt 19813128  T
Q  300 cttttccgacgcacaatat 318  Q
    |||||||||||||||||||    
T  19813127 cttttccgacgcacaatat 19813109  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 19813376 - 19813224
Alignment:
Q  24 ggaacaagagtgttattttttggaggaagacttgcagaaccatcaagatcaattttttgattagctcttaaacaatcaggaacataattttcataaggaa 123  Q
    ||||||||||| |||| |||| |||||||||||| ||||||||||  ||||||  ||| || |||||| | ||  ||| ||||| |||||||||| ||||    
T  19813376 ggaacaagagtcttatgttttcgaggaagacttgaagaaccatcagcatcaatactttcatcagctctcagactctcatgaacagaattttcatatggaa 19813277  T
Q  124 catcaacataaaatttatcaaccttcctagttttaggttttgagccatcatca 176  Q
    |||   ||||||||  |||| ||||| ||||||||| |||||| |||||||||    
T  19813276 cattggcataaaatccatcagccttcatagttttagtttttgaaccatcatca 19813224  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 318
Target Start/End: Complemental strand, 19952158 - 19951950
Alignment:
Q  110 attttcataaggaacatcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaataagagtatcaacaaga 209  Q
    |||||||| |||||||||| ||| |   ||||||||||||||| |||||| | | || ||||||||||||| ||||||||| | |||||| ||||||  |    
T  19952158 attttcattaggaacatcagcatcatgattatcaaccttcctaattttagttctggaaccatcatcacaaaaatttccaaagacaagagtttcaacacaa 19952059  T
Q  210 ttgggagaaaatccaggctgaacacaaacttcaataccacttttatttaattttcctacatgtggtctgtgttttcttgaactggaacttcttttccgac 309  Q
    |||| || |||||||||  |||||| |||  || |||||||| | ||   |||||||||||| ||||| | |||||||| ||| | | |||||||| |      
T  19952058 ttggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacatgaggtctatcttttcttggacttggagttcttttctgct 19951959  T
Q  310 gcacaatat 318  Q
    |||||||||    
T  19951958 gcacaatat 19951950  T

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Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 20006255 - 20006491
Alignment:
Q  24 ggaacaagagtgttattttttggaggaagacttgcagaaccatcaagatcaattttttgattagctcttaaacaatcaggaacataattttcataaggaa 123  Q
    |||||||||||||||| ||||||||||||||||| || | | |||  ||||||  ||| || || ||| |||  |||| ||||||| |||| ||||||||    
T  20006255 ggaacaagagtgttatgttttggaggaagacttgaaggagcgtcagcatcaatactttcatcaggtctcaaattatcatgaacata-ttttaataaggaa 20006353  T
Q  124 catcaacataaaatttatcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatcc 223  Q
    ||||  | | ||| | |||| | ||| ||||||| | |||||| ||||||| | ||| ||| ||||||||||||||  ||||||||||||||| ||||||    
T  20006354 catcggctttaaaatcatcagcattcatagtttttgtttttgaaccatcat-ataaaaatt-ccaaaaataagagtgccaacaagattgggaggaaatcc 20006451  T
Q  224 aggctgaacacaaacttcaataccacttttatttaatttt 263  Q
    |    |||||| ||| |||||||||||| |||| ||||||    
T  20006452 atctggaacaccaacatcaataccacttctattcaatttt 20006491  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 20007415 - 20007490
Alignment:
Q  169 catcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaat 244  Q
    ||||||||||||  |||||||||| ||||| ||||||||||||||||| |||||||||  |||||| ||| |||||    
T  20007415 catcatcacaaaattttccaaaaacaagagcatcaacaagattgggaggaaatccaggtggaacaccaacatcaat 20007490  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 26654123 - 26654066
Alignment:
Q  169 catcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatccagg 226  Q
    ||||| ||||||  |||||| ||||| |||| |||||||||||||||| |||||||||    
T  26654123 catcagcacaaaattttccataaatatgagtgtcaacaagattgggaggaaatccagg 26654066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 22685454 - 22685565
Alignment:
Q  140 atcaaccttcctagttttaggttttgagccatcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatccaggctgaacacaaact 239  Q
    |||||||||||||||||||| |||||| ||| ||||||  |  ||||||||| |||| || | ||||||||||  ||||||||||||  |||||| |||     
T  22685454 atcaaccttcctagttttagcttttgaaccaccatcactgaagtttccaaaattaagtgtgttaacaagattgaaagaaaatccaggtggaacaccaaca 22685553  T
Q  240 tcaataccactt 251  Q
    ||| ||||||||    
T  22685554 tcattaccactt 22685565  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 22655478 - 22655511
Alignment:
Q  161 ttttgagccatcatcacaaacatttccaaaaata 194  Q
    ||||||||||||||||||||||||||||||||||    
T  22655478 ttttgagccatcatcacaaacatttccaaaaata 22655511  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 1718171 - 1718094
Alignment:
Q  193 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttatttaattttcctacat 270  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| |||||||||| ||   |||||||||||    
T  1718171 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 1718094  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 27472771 - 27472712
Alignment:
Q  98 atcaggaacataattttcataaggaacatcaacataaaatttatcaaccttcctagtttt 157  Q
    ||||| |||| ||||| || ||||||||||| ||||||| | ||||||||||||||||||    
T  27472771 atcagcaacaaaatttgcacaaggaacatcagcataaaaatcatcaaccttcctagtttt 27472712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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