View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_low_13 (Length: 294)
Name: NF3793_low_13
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 305297 - 305023
Alignment:
| Q |
11 |
catagggatcaaaagtacaattaagccataaataaaatgttactaaaactttactgttccattctaaacttcctaattcccccgccataccaccgttatt |
110 |
Q |
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| T |
305297 |
catagggaccaaaaatgcaattaagccataaataaaatgttactaaaactttactgttccattctaaacttcctaattcccccgccataccaccgttatt |
305198 |
T |
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| Q |
111 |
ataaacagggtaaccacacaaaactccttttgaattgctttatgacatgccactttggttgtttatcttttgcatcacatata-------ctaaccgtat |
203 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
305197 |
ataaacaggttaaccacacaaaactccttttgaattgctttatgacatgccactttggttgtttatcttttgcatcacatatagatatacttaaccgtat |
305098 |
T |
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| Q |
204 |
aacaaaactagatcctagagctaaacaaaattatgtannnnnnnnagatttaagtaagaaactaaaggttatgtt |
278 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
305097 |
aacaaaactagatcctagagctaaacaaaattatgtattttttttagatttaagtaagaaactaaaggttatgtt |
305023 |
T |
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