View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3793_low_16 (Length: 268)

Name: NF3793_low_16
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3793_low_16
NF3793_low_16
[»] chr4 (2 HSPs)
chr4 (11-253)||(42448902-42449144)
chr4 (153-223)||(20425740-20425810)
[»] chr5 (1 HSPs)
chr5 (151-253)||(42261463-42261565)
[»] chr1 (1 HSPs)
chr1 (136-226)||(51869132-51869222)
[»] chr6 (1 HSPs)
chr6 (131-187)||(29136437-29136493)
[»] chr2 (1 HSPs)
chr2 (151-226)||(29353315-29353390)
[»] chr8 (1 HSPs)
chr8 (131-209)||(31135842-31135920)
[»] scaffold0134 (1 HSPs)
scaffold0134 (154-206)||(17139-17191)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 42449144 - 42448902
Alignment:
Q  11 cagagagccaataaaactcgcaatgattactgtattcatatgtcctaggaagcaatttgtgcaggacaagaaatgtatcatcataataaggatgattacc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42449144 cagagagccaataaaagtcgcaatgattactgtattcatatgtcctaggaagcaatttgtgcaggacaagaaatgtatcatcataataaggatgattacc 42449045  T
Q  111 atggatgatattgtcggtgtacattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42449044 atggatgatattgtcggtgtacattttcataaaacgaggatttccaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaag 42448945  T
Q  211 ggaagttttgacaaaatgaagagcactatatcatgaggtaaat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42448944 ggaagttttgacaaaatgaagagcactatatcatgaggtaaat 42448902  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 20425810 - 20425740
Alignment:
Q  153 ttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgaca 223  Q
    ||||||||| |||||||||   ||||||||||||| |||||  ||||| |||||||| |||||||||||||    
T  20425810 ttcaaataaaagagaccatgcattgcatacgcattcaaatcgtttcaaagattttaaaggaagttttgaca 20425740  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 42261565 - 42261463
Alignment:
Q  151 ttttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaatgaagagcactatatcatgaggta 250  Q
    ||||| |||||||||||||||  ||||||||| |||  ||| | ||||||||||||||| || ||||||||||||||||||||||| | |||||||||||    
T  42261565 ttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcacaagatcatgaggta 42261466  T
Q  251 aat 253  Q
    |||    
T  42261465 aat 42261463  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 51869222 - 51869132
Alignment:
Q  136 ttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaa 226  Q
    ||||| ||| |||| | ||||||||||||||||||| ||||| || | |||  |||||  ||||| |||||||| ||||||||||||||||    
T  51869222 ttcatgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattttaacggaagttttgacaaaa 51869132  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 29136493 - 29136437
Alignment:
Q  131 acattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcatt 187  Q
    |||| ||||| ||||||| ||||||||||||||||||||||  |||||| |||||||    
T  29136493 acatgttcatgaaacgagtattttcaaataagagagaccatgatttgcaaacgcatt 29136437  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 29353315 - 29353390
Alignment:
Q  151 ttttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaa 226  Q
    |||||||||||||||||||||  |||   |||||||  ||| | |||||| |||||||| ||||||||||||||||    
T  29353315 ttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagattttaaaggaagttttgacaaaa 29353390  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 31135842 - 31135920
Alignment:
Q  131 acattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaa 209  Q
    |||| |||||||||  ||| ||||||||||| ||||||||| |||||||||| |||  ||||| ||||||  |||||||    
T  31135842 acatgttcataaaaatagggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaa 31135920  T

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Target: scaffold0134 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 17139 - 17191
Alignment:
Q  154 tcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattt 206  Q
    |||| |||||||||||||  |||||| ||||||| |||||||||||| |||||    
T  17139 tcaattaagagagaccatgatttgcaaacgcattcaaatctcttcaaagattt 17191  T

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