View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_low_17 (Length: 262)
Name: NF3793_low_17
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 48541825 - 48542059
Alignment:
| Q |
17 |
acatacaccaagataactagataagactttccaaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagtt |
116 |
Q |
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| T |
48541825 |
acatacaccaagataactagataagactttccaaaatctagtaatctacaataagaaatagcacaacctagctacacatgttgggtgtgcattcagagtt |
48541924 |
T |
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| Q |
117 |
ttgctgctctttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccg |
216 |
Q |
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| T |
48541925 |
ttgctgctctttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatgattaggccg |
48542024 |
T |
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| Q |
217 |
tcatgactatccttcactttcttgtgactatctct |
251 |
Q |
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| T |
48542025 |
tcatgactatccttcactttcttgtgactatctct |
48542059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 9837456 - 9837313
Alignment:
| Q |
108 |
ttcagagttttgctgctctttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccatgttacggtatatg |
207 |
Q |
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| T |
9837456 |
ttcagggttttgctgttctttccatatccttcctgttactcgtaacttcagctctttcctatctccaccagagaagaaaagtgccatgttccggtatata |
9837357 |
T |
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| Q |
208 |
attaggccgtcatgactatccttcactttcttgtgactatctct |
251 |
Q |
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| T |
9837356 |
atgaggccatcatgactgtctctaactttcttgtggctgtctct |
9837313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 41632791 - 41632858
Alignment:
| Q |
127 |
ttccatatccttcctgttactcttagtttcaactcttttctatccccacctgagaagaaaagtgccat |
194 |
Q |
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| T |
41632791 |
ttccatattcttccggtgactctaagtttcaactccttcctatccccaccagagaaaaatagtgccat |
41632858 |
T |
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