View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_low_18 (Length: 248)
Name: NF3793_low_18
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 36935583 - 36935365
Alignment:
| Q |
14 |
gaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagacc |
113 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36935583 |
gaagcacatataacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagacc |
36935484 |
T |
|
| Q |
114 |
agccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgcc |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
36935483 |
agccatgaaagccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgcc |
36935384 |
T |
|
| Q |
214 |
caaaacagtatgatggtag |
232 |
Q |
| |
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||||| ||||||||||||| |
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| T |
36935383 |
caaaagagtatgatggtag |
36935365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 36956437 - 36956219
Alignment:
| Q |
14 |
gaagcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagacc |
113 |
Q |
| |
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|||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||| |||||||| ||||||||||| ||||| |
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| T |
36956437 |
gaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagacc |
36956338 |
T |
|
| Q |
114 |
agccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgcc |
213 |
Q |
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||| |||||||| |||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||| | ||||||||||||||||| ||||||| |
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| T |
36956337 |
agcaatgaaagcaaaagataatgaaatgagagcgattccaagaagcggcacaacaattttgagagtaaaagttaccaattcagttaatccaagtgttgcc |
36956238 |
T |
|
| Q |
214 |
caaaacagtatgatggtag |
232 |
Q |
| |
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||||| ||||||||||||| |
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| T |
36956237 |
caaaagagtatgatggtag |
36956219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 36948359 - 36948148
Alignment:
| Q |
16 |
agcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagaccag |
115 |
Q |
| |
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|||| |||||| | |||| ||||| | |||||||||| || |||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||| |
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| T |
36948359 |
agcatatataaaagaatctcaaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccag |
36948260 |
T |
|
| Q |
116 |
ccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgccca |
215 |
Q |
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| |||||||||||||| | || ||||||||||||||||||| ||||||||| ||||| |||| || ||| ||||||||||||||||| ||||||||| |
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| T |
36948259 |
caatgaaagccaaagacagtgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgccca |
36948160 |
T |
|
| Q |
216 |
aaacagtatgat |
227 |
Q |
| |
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||| |||||||| |
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|
| T |
36948159 |
aaagagtatgat |
36948148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 37069672 - 37069816
Alignment:
| Q |
88 |
agttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtca |
187 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||| |||||||| || | ||||||| |
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| T |
37069672 |
agttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttcagtgagaaagtca |
37069771 |
T |
|
| Q |
188 |
gcaattcagttaatccaaatgttgcccaaaacagtatgatggtag |
232 |
Q |
| |
|
||||||||||||||||| | ||||| |||| |||||||| |||| |
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|
| T |
37069772 |
ccaattcagttaatccaagttttgccaaaaagagtatgatagtag |
37069816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 37079404 - 37079576
Alignment:
| Q |
60 |
aaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaatgagagcgattccaagaagt |
159 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| || | ||||||||||||||||||| |
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|
| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
160 |
ggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgcccaaaacagtatgatggtag |
232 |
Q |
| |
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||||| || ||||| |||| ||||||| |||||||| || ||||| |||||||||| |||||||| |||| |
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|
| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtag |
37079576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 12493389 - 12493605
Alignment:
| Q |
16 |
agcacatataacaaaatcacaaccgcgacaaaaatcagtgccataaccagaaacacattggacaaccaacgtagttcactgataacagtgtagagaccag |
115 |
Q |
| |
|
|||| ||||||| |||||||||||| | |||||||| ||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| |||| || |
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| T |
12493389 |
agcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactag |
12493488 |
T |
|
| Q |
116 |
ccatgaaagccaaagataatgcaatgagagcgattccaagaagtggcataacgattttgagagtaaaagtcagcaattcagttaatccaaatgttgccca |
215 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| ||||| || ||||||||||||||||| | |||||||||||| |||| ||||||||| |
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|
| T |
12493489 |
ccatgaaagccaaagataacgaaatgagagcgattccaagaagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgccca |
12493588 |
T |
|
| Q |
216 |
aaacagtatgatggtag |
232 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
12493589 |
aaagagtatgatagtag |
12493605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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