View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3793_low_2 (Length: 475)

Name: NF3793_low_2
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3793_low_2
NF3793_low_2
[»] chr5 (23 HSPs)
chr5 (8-456)||(9603434-9603879)
chr5 (6-75)||(2740273-2740342)
chr5 (5-74)||(28177775-28177844)
chr5 (6-78)||(15409642-15409714)
chr5 (5-73)||(16327902-16327970)
chr5 (6-74)||(33149670-33149738)
chr5 (6-76)||(13811650-13811720)
chr5 (6-76)||(18520916-18520986)
chr5 (5-74)||(26720516-26720585)
chr5 (5-74)||(26990265-26990334)
chr5 (6-74)||(35785199-35785267)
chr5 (6-74)||(35943924-35943992)
chr5 (8-76)||(36732976-36733044)
chr5 (11-69)||(10356639-10356698)
chr5 (9-75)||(2252203-2252269)
chr5 (5-75)||(6679697-6679767)
chr5 (6-74)||(14831814-14831882)
chr5 (6-74)||(40145407-40145475)
chr5 (6-74)||(42414334-42414402)
chr5 (9-76)||(3921300-3921367)
chr5 (11-77)||(39688934-39689000)
chr5 (5-74)||(33825355-33825424)
chr5 (6-76)||(31008986-31009056)
[»] chr8 (26 HSPs)
chr8 (189-442)||(6451635-6451888)
chr8 (201-454)||(6457737-6457990)
chr8 (6-74)||(1179972-1180040)
chr8 (6-69)||(10621119-10621182)
chr8 (11-84)||(4854900-4854973)
chr8 (6-75)||(37038478-37038547)
chr8 (6-74)||(34012328-34012396)
chr8 (6-73)||(5957831-5957898)
chr8 (11-76)||(24307627-24307692)
chr8 (6-75)||(44507119-44507188)
chr8 (6-74)||(504153-504221)
chr8 (6-74)||(12831047-12831115)
chr8 (6-74)||(15048214-15048281)
chr8 (6-74)||(15197333-15197401)
chr8 (6-77)||(14547919-14547990)
chr8 (1-76)||(42221513-42221588)
chr8 (11-77)||(24307830-24307896)
chr8 (5-74)||(20074965-20075034)
chr8 (6-74)||(23122629-23122697)
chr8 (6-74)||(40423975-40424043)
chr8 (9-76)||(16056436-16056503)
chr8 (9-76)||(16383375-16383442)
chr8 (9-76)||(34307214-34307281)
chr8 (5-74)||(43414612-43414681)
chr8 (9-75)||(32032724-32032789)
chr8 (218-270)||(6353049-6353101)
[»] chr2 (32 HSPs)
chr2 (219-397)||(42693847-42694025)
chr2 (6-77)||(9058477-9058548)
chr2 (6-76)||(20700813-20700883)
chr2 (5-74)||(40613933-40614002)
chr2 (6-74)||(13438343-13438411)
chr2 (6-76)||(33436132-33436202)
chr2 (6-75)||(2533123-2533191)
chr2 (6-75)||(7465767-7465836)
chr2 (6-71)||(28863458-28863523)
chr2 (6-74)||(17473020-17473088)
chr2 (6-74)||(40701478-40701546)
chr2 (6-77)||(10249414-10249485)
chr2 (6-77)||(17823781-17823852)
chr2 (4-75)||(33436210-33436281)
chr2 (5-76)||(42257191-42257262)
chr2 (9-76)||(45097770-45097837)
chr2 (6-76)||(30915461-30915531)
chr2 (6-75)||(5574520-5574589)
chr2 (6-71)||(19930852-19930917)
chr2 (1-74)||(27864704-27864777)
chr2 (6-75)||(32505680-32505749)
chr2 (6-74)||(28381687-28381755)
chr2 (6-76)||(38273174-38273244)
chr2 (6-76)||(38882846-38882915)
chr2 (9-86)||(26891539-26891616)
chr2 (6-74)||(4060685-4060753)
chr2 (9-73)||(41575138-41575202)
chr2 (5-75)||(36168835-36168905)
chr2 (9-54)||(2997522-2997567)
chr2 (9-74)||(17820039-17820104)
chr2 (9-74)||(38732354-38732419)
chr2 (9-74)||(43490121-43490186)
[»] chr7 (30 HSPs)
chr7 (6-75)||(36362025-36362094)
chr7 (6-75)||(36361945-36362014)
chr7 (6-76)||(8080415-8080485)
chr7 (6-75)||(3434561-3434630)
chr7 (1-74)||(19329842-19329915)
chr7 (9-77)||(36208170-36208238)
chr7 (6-77)||(7389386-7389457)
chr7 (1-76)||(45223040-45223115)
chr7 (6-76)||(19436219-19436289)
chr7 (6-76)||(38837215-38837285)
chr7 (6-71)||(3783998-3784063)
chr7 (6-74)||(35137533-35137601)
chr7 (9-75)||(41915740-41915806)
chr7 (5-74)||(46374833-46374902)
chr7 (8-76)||(10343597-10343665)
chr7 (6-74)||(38267040-38267108)
chr7 (4-75)||(22343360-22343431)
chr7 (13-76)||(35468894-35468957)
chr7 (26-76)||(11044186-11044236)
chr7 (6-76)||(40957705-40957775)
chr7 (9-74)||(32564461-32564526)
chr7 (9-74)||(41423682-41423747)
chr7 (6-74)||(4999546-4999614)
chr7 (6-74)||(21234401-21234469)
chr7 (5-69)||(35522881-35522945)
chr7 (9-76)||(38044195-38044262)
chr7 (5-75)||(46033832-46033902)
chr7 (6-71)||(3694370-3694435)
chr7 (5-74)||(39255954-39256023)
chr7 (13-74)||(40846152-40846213)
[»] chr4 (26 HSPs)
chr4 (6-76)||(50052460-50052530)
chr4 (7-74)||(40574779-40574846)
chr4 (5-74)||(50526202-50526271)
chr4 (9-77)||(29547994-29548062)
chr4 (6-77)||(48183081-48183152)
chr4 (6-76)||(480479-480549)
chr4 (6-76)||(42044399-42044469)
chr4 (9-74)||(6034044-6034109)
chr4 (9-74)||(8343198-8343263)
chr4 (6-74)||(11511494-11511562)
chr4 (9-77)||(55475188-55475256)
chr4 (6-77)||(23608232-23608303)
chr4 (6-75)||(29234277-29234346)
chr4 (6-74)||(41236347-41236415)
chr4 (8-74)||(3481654-3481720)
chr4 (6-76)||(24995139-24995209)
chr4 (6-76)||(29239884-29239954)
chr4 (8-74)||(31910192-31910258)
chr4 (9-75)||(47986207-47986273)
chr4 (9-75)||(50813927-50813993)
chr4 (5-77)||(47104541-47104613)
chr4 (6-74)||(54473565-54473633)
chr4 (9-76)||(19670751-19670818)
chr4 (6-77)||(29977882-29977953)
chr4 (6-69)||(53352598-53352660)
chr4 (9-54)||(17983778-17983823)
[»] chr3 (25 HSPs)
chr3 (6-77)||(11095385-11095456)
chr3 (6-76)||(27714923-27714993)
chr3 (6-76)||(49607412-49607482)
chr3 (5-77)||(35965805-35965877)
chr3 (6-74)||(53982011-53982079)
chr3 (5-76)||(11347953-11348024)
chr3 (6-77)||(54868927-54868998)
chr3 (5-75)||(8956761-8956831)
chr3 (9-74)||(14623874-14623939)
chr3 (5-74)||(26141563-26141632)
chr3 (5-73)||(13898086-13898154)
chr3 (6-74)||(33644200-33644268)
chr3 (6-69)||(52629305-52629368)
chr3 (5-62)||(20764946-20765003)
chr3 (5-78)||(41189795-41189868)
chr3 (5-74)||(51419391-51419460)
chr3 (6-70)||(48587123-48587187)
chr3 (6-73)||(31456690-31456757)
chr3 (5-75)||(24699985-24700055)
chr3 (5-75)||(35536625-35536695)
chr3 (6-76)||(36707456-36707526)
chr3 (6-75)||(17470404-17470473)
chr3 (6-74)||(8076393-8076461)
chr3 (6-75)||(21746213-21746284)
chr3 (1-62)||(39670023-39670084)
[»] chr1 (25 HSPs)
chr1 (6-76)||(2581913-2581983)
chr1 (1-74)||(27564762-27564835)
chr1 (6-75)||(51898715-51898784)
chr1 (6-74)||(9474908-9474976)
chr1 (6-74)||(47452352-47452420)
chr1 (5-76)||(32813245-32813316)
chr1 (5-74)||(37649198-37649267)
chr1 (6-74)||(3000319-3000387)
chr1 (6-76)||(38595152-38595222)
chr1 (6-75)||(50630457-50630526)
chr1 (6-74)||(43132-43200)
chr1 (6-74)||(48716314-48716382)
chr1 (5-76)||(23597122-23597193)
chr1 (6-77)||(49811559-49811630)
chr1 (5-75)||(7740732-7740802)
chr1 (6-76)||(8346420-8346490)
chr1 (6-76)||(38632353-38632423)
chr1 (1-74)||(3302560-3302633)
chr1 (9-74)||(41608528-41608593)
chr1 (6-71)||(44548408-44548473)
chr1 (9-74)||(50591035-50591100)
chr1 (5-67)||(26440741-26440803)
chr1 (5-75)||(37926469-37926539)
chr1 (8-77)||(26274429-26274498)
chr1 (6-75)||(41758804-41758873)
[»] chr6 (20 HSPs)
chr6 (6-74)||(17598554-17598622)
chr6 (6-76)||(23128159-23128229)
chr6 (8-73)||(946377-946442)
chr6 (9-74)||(31953065-31953130)
chr6 (6-75)||(11427615-11427686)
chr6 (6-74)||(32869678-32869746)
chr6 (5-76)||(12732480-12732551)
chr6 (7-70)||(28536519-28536582)
chr6 (5-75)||(31976247-31976317)
chr6 (9-77)||(15990077-15990145)
chr6 (6-74)||(31109432-31109500)
chr6 (9-76)||(30341395-30341462)
chr6 (6-76)||(31110793-31110861)
chr6 (9-74)||(15508059-15508124)
chr6 (5-69)||(9379743-9379807)
chr6 (6-76)||(6209497-6209567)
chr6 (6-76)||(15832575-15832645)
chr6 (9-75)||(22422053-22422119)
chr6 (5-58)||(4231564-4231617)
chr6 (6-74)||(29857827-29857895)
[»] scaffold0321 (1 HSPs)
scaffold0321 (6-76)||(10141-10211)
[»] scaffold1268 (1 HSPs)
scaffold1268 (6-74)||(961-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (6-74)||(961-1029)
[»] scaffold0237 (1 HSPs)
scaffold0237 (6-74)||(4029-4097)


Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 9603879 - 9603434
Alignment:
Q  8 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttacttaatataatgctaacacaggtattgtga 107  Q
    ||||||||||||||||||||||| ||||  ||||||| ||||||||||||| ||| ||||||||||||||    ||||||||||||||||| ||||||||    
T  9603879 gtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactctta----atataatgctaacacagatattgtga 9603784  T
Q  108 ctttataatttatatttatgggaaatgctaa-atttgccctaagggttagggcattggaaaatatgttaatttattttataaaagattaataatgtacct 206  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9603783 ctttataatctatatttatgggaaatgctaacatttgccctaagggttagggcattggaaaatatgttaatttattttacaaaagattaataatgtacct 9603684  T
Q  207 ctgattacatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603683 ctgattacatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtg 9603584  T
Q  307 taggaagttcaattccaccttcaaataagtcacgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603583 taggaagttcaattccaccttcaaataagtcacgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaa 9603484  T
Q  407 aggtaacacatcttgagacaatgattttattccatatgtaaggaagtcag 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603483 aggtaacacatcttgagacaatgattttattccatatgtaaggaagtcag 9603434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 2740342 - 2740273
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| ||||||||||||    
T  2740342 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 28177844 - 28177775
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| ||||    
T  28177844 cacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 15409642 - 15409714
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttac 78  Q
    ||||||||||||||||||| |||||||| | |||||||  ||||||||||||||||| |||||| ||||||||    
T  15409642 acgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactcttac 15409714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 16327970 - 16327902
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 73  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||||| | ||| ||||||||||    
T  16327970 cacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcattact 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 33149670 - 33149738
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||| |||||||||| |||||||| || ||||||||||||||||| ||||||| |||||||||||    
T  33149670 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 13811720 - 13811650
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| |||| ||||||||    
T  13811720 acgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 18520916 - 18520986
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||| ||||    
T  18520916 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 26720585 - 26720516
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| |||||| ||||    
T  26720585 cacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 26990334 - 26990265
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| |||||| ||||    
T  26990334 cacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 35785267 - 35785199
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  35785267 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 35943924 - 35943992
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| |||||| ||||    
T  35943924 acgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 36732976 - 36733044
Alignment:
Q  8 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||| |||||||| || |||||| | |||||||| ||||||| |||||||||||||    
T  36732976 gtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 10356698 - 10356639
Alignment:
Q  11 tcagatttttgtgtaggtgtcaatgg-atgtattaccacctaaggatgtctatatatcat 69  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 2252203 - 2252269
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||| |||||    
T  2252203 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 6679767 - 6679697
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||||||| ||||||||  | |||||| |||||||| ||||||||| |||||| |||||    
T  6679767 cacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 14831882 - 14831814
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||| ||| |||||||| || |||||| |||||||||  ||||||| |||||||||||    
T  14831882 acgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 40145475 - 40145407
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| | ||| || || |||||| |||||||||| ||||||| |||||||||||    
T  40145475 acgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 42414334 - 42414402
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||  | ||||||| |||||||||||    
T  42414334 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 3921300 - 3921367
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  3921300 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 3921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 39688934 - 39689000
Alignment:
Q  11 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    |||||||||||||| |||||||| ||||||||| |||| ||||| ||| ||| |||||| |||||||    
T  39688934 tcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactctta 39689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 33825355 - 33825424
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| ||| |||||||| |  |||||| ||||||||| ||||||||  ||||||||||    
T  33825355 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 31009056 - 31008986
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||  | | |||||||  ||||||||||||| ||| |||||| ||||||    
T  31009056 acgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactctt 31008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 189 - 442
Target Start/End: Original strand, 6451635 - 6451888
Alignment:
Q  189 aagattaataatgtacctctgattacatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactga 288  Q
    ||||| ||||| |||||||| ||||| || |||||||||||||| ||| |||||||||| || |||||||  |||||||| ||  |||| ||||| ||||    
T  6451635 aagatgaataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctga 6451734  T
Q  289 ttttgctcaatatatgtgtaggaagttcaattccaccttcaaataagtc-acgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaa 387  Q
    ||| ||| | ||||| ||||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||||||| || |||||||||| |||||    
T  6451735 tttggctgagtatatctgtaggaagcttaattccaccttcgaa-aagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaa 6451833  T
Q  388 agattacagatttaaacaaaggtaacacatcttgagacaatgattttattccata 442  Q
    | ||||||||||  |||||||| || || ||||| |||||||| |||||||||||    
T  6451834 aaattacagattgtaacaaaggcaaaacgtcttgtgacaatgactttattccata 6451888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 201 - 454
Target Start/End: Original strand, 6457737 - 6457990
Alignment:
Q  201 gtacctctgattacatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaata 300  Q
    |||||| |||||||||| || |||||||||||||||||||||||||| |||||||| || |||||||| ||  | ||||||||||| ||||  || | ||    
T  6457737 gtacctttgattacatgaggaggtggaaacttgaggacttgttcaccgtcagtgcgaaagatttccttaagggccggtaagggactaatttgactaagta 6457836  T
Q  301 tatgtgtaggaagttcaattccaccttcaaataagtc-acgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatt 399  Q
    ||| ||||||||| | ||| |||||||| || ||||| ||| ||||||||||||||||| ||||||||||| |||||||| |  ||||| || |||||||    
T  6457837 tatctgtaggaagcttaatcccaccttcgaa-aagtccacgtacttcatcgaagctatcgaactcatttggtgtgaaattgaggtcaaaaatcacagatt 6457935  T
Q  400 taaacaaaggtaacacatcttgagacaatgattttattccatatgtaaggaagtc 454  Q
    ||||||| ||||  |||| |||||||| |||||||||||||||  ||||||||||    
T  6457936 taaacaatggtatgacattttgagacagtgattttattccatacataaggaagtc 6457990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 1179972 - 1180040
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| |||||||||||    
T  1179972 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 10621119 - 10621182
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 69  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||    
T  10621119 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 4854900 - 4854973
Alignment:
Q  11 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttacttaata 84  Q
    |||||||||| ||||||||| || || |||||| |||||||||||||||||| |||||||||||||||| ||||    
T  4854900 tcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactcttactaaata 4854973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 37038547 - 37038478
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| ||||||||||||    
T  37038547 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 34012328 - 34012396
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||| |||||||||| |||||||| || ||||||||||||||||| ||||||| |||||||||||    
T  34012328 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 5957898 - 5957831
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 73  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||||| |||||||| ||||||||||    
T  5957898 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 24307692 - 24307627
Alignment:
Q  11 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||| ||| |||||| ||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctt 24307627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 44507119 - 44507188
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| ||||| || |  ||||||||||||||||| ||||||| ||||||||||||    
T  44507119 acgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 504153 - 504221
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  504153 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 12831115 - 12831047
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || ||||||  ||||||||| ||||||| |||||||||||    
T  12831115 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 15048214 - 15048281
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| ||||    
T  15048214 acgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 15197401 - 15197333
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||  ||||||| |||||||||||    
T  15197401 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 14547990 - 14547919
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| |||| |||||||||    
T  14547990 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactctta 14547919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42221588 - 42221513
Alignment:
Q  1 tgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||| ||||||||||||||||||| |||||| | | |||||||  ||||||||||||| ||| |||||||||||||    
T  42221588 tgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcattactctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 24307830 - 24307896
Alignment:
Q  11 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    |||||||||||||| |||||||| ||||||||| |||||||||| ||| ||| |||||| |||||||    
T  24307830 tcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactctta 24307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 20074965 - 20075034
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||| |||||| ||| |||||||| |  |||||| |||||||||||||||||| |||||||||||    
T  20074965 cacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 23122629 - 23122697
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||||||  | |||||| |||| ||||| ||||||| |||||||||||    
T  23122629 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 40423975 - 40424043
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| | |||||| || |||||| |||||||||| | ||||| |||||||||||    
T  40423975 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 16056436 - 16056503
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| |||||||| |||||||||  ||| ||||||||| ||| |||||| ||||||    
T  16056436 tgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactctt 16056503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 16383442 - 16383375
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  16383442 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 34307281 - 34307214
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  34307281 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 43414612 - 43414681
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||| |||||||||||| |||||||| || ||| || ||| |||||||||||||| |||||| ||||    
T  43414612 cacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 32032789 - 32032724
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||| | |||||| ||||||||| |||||||||| ||| ||| |||||| |||||    
T  32032789 tgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 6353049 - 6353101
Alignment:
Q  218 tggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttga 270  Q
    ||||||||||||||| ||  |||||||||||||||  ||||||| ||||||||    
T  6353049 tggtggtggaaacttaagtgcttgttcaccatcagatcggaaaagttccttga 6353101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 397
Target Start/End: Original strand, 42693847 - 42694025
Alignment:
Q  219 ggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtgtaggaagttcaa 318  Q
    ||||||||| |||||||||  ||||||||||| || || || ||||| ||||| || ||||| ||||| || ||||| | || || ||| || || | ||    
T  42693847 ggtggtggatacttgaggaactgttcaccatcggttcgaaagatttctttgagaacaggtaacggacttatcttgctaagtacatctgttggcagcttaa 42693946  T
Q  319 ttccaccttcaaataagtcacgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacaga 397  Q
    ||||||| ||| | ||  || | |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  42693947 ttccaccctcatacaatccatgaacttcatcaaagctatcaaactcatttggtgtgaaatttaaatcaaagattacaga 42694025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 9058548 - 9058477
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||||||||    
T  9058548 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 9058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 20700883 - 20700813
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||||||||| ||||| || |||||| |||| ||||||||||||| |||||||||||||    
T  20700883 acgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 40613933 - 40614002
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| ||||    
T  40613933 cacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 13438411 - 13438343
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| |||||||||  ||||||||| ||||||| |||||||||||    
T  13438411 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 33436132 - 33436202
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||| |||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||||    
T  33436132 acgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 2533191 - 2533123
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||| |||||| |||||    
T  2533191 acgtgtcagatttttgtgt-ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 7465767 - 7465836
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| || |||||| ||| |||||| ||||||| ||||||||||||    
T  7465767 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 28863523 - 28863458
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 71  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  28863523 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 17473088 - 17473020
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| ||| |||||| ||||||| |||||||||||    
T  17473088 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 40701546 - 40701478
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  40701546 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 10249414 - 10249485
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| ||||||||  | ||||||  ||||||||| ||||||| ||||||||||||||    
T  10249414 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactctta 10249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 17823852 - 17823781
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| |||||  | | ||||||| |||||||||||||| ||| ||||||||||||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactctta 17823781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 33436281 - 33436210
Alignment:
Q  4 tcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||| ||| ||||||||  | |||||| ||| |||||||||||||| ||||||||||||    
T  33436281 tcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 42257262 - 42257191
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| ||| ||||||||  |||||||| |||||||| ||||||||| |||||| ||||||    
T  42257262 cacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactctt 42257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 45097770 - 45097837
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||| | |||||||| ||||||||| |||||||||||||| ||| |||||| ||||||    
T  45097770 tgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctt 45097837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 30915531 - 30915461
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||| ||| || ||||| || |||||| |||||||||| ||||||| |||||||||||||    
T  30915531 acgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 5574520 - 5574589
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||| ||| |||||||| || |||||| |||||||||  ||||||| ||||||||||||    
T  5574520 acgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 19930852 - 19930917
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 71  Q
    ||||||||||||||||||| | |||||| || |||||| |||||||||| ||||||| ||||||||    
T  19930852 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27864777 - 27864704
Alignment:
Q  1 tgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||| ||||||||||||||||||| | |||||| || |||||| |||| ||||| ||||||| |||||||||||    
T  27864777 tgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 32505680 - 32505749
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| ||||||||  | ||||||  ||||||||| ||||||| ||||||||||||    
T  32505680 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 28381687 - 28381755
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||| |  | |||||| |||||||||| ||||||| |||||||||||    
T  28381687 acgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 38273174 - 38273244
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| ||||| || || |||||| ||| ||||| |||||||| |||||| ||||||    
T  38273174 acgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctt 38273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 38882846 - 38882915
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| | |||||| || | |||| |||||||||| ||||||| |||||||||||||    
T  38882846 acgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 26891539 - 26891616
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttacttaatata 86  Q
    |||||||||||||||| |||||| | || |||||| |||||||||| || |||| |||||| |||||| ||| |||||    
T  26891539 tgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactctttctttatata 26891616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 4060753 - 4060685
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| | ||||||  | ||||||  ||||||||| ||||||| |||||||||||    
T  4060753 acgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 41575202 - 41575138
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 73  Q
    ||||| ||||||||||   |||||| || |||||||||| |||||||||||||| ||||||||||    
T  41575202 tgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 36168905 - 36168835
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||| |||||||||| || || || |||||||||  || |||||||||||||| |||||| |||||    
T  36168905 cacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 2997522 - 2997567
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 54  Q
    |||||||||||||||| |||||||| || |||||| ||||||||||    
T  2997522 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 2997567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 17820039 - 17820104
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| |||||||| || |||||| |||||||  | ||||||| |||||| ||||    
T  17820039 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 38732419 - 38732354
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| |||||||| |||||||||  ||| ||||| ||| ||| |||||| ||||    
T  38732419 tgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 43490186 - 43490121
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| |||||||| || ||||||  ||||||||| ||| ||| |||||| ||||    
T  43490186 tgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 36362094 - 36362025
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||    
T  36362094 acgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 36361945 - 36362014
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||||||||||||    
T  36361945 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 8080415 - 8080485
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||| |||||||||||| || |||||| |||||||||| ||||||| |||||||||||||    
T  8080415 acgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 3434630 - 3434561
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||| ||||||||| |||||||| || |||||| |||||||||||||||||| ||||||||||||    
T  3434630 acgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19329915 - 19329842
Alignment:
Q  1 tgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||| ||||||||||||||||||| ||||||||  | |||||| |||||||||||||||||| |||||||||||    
T  19329915 tgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 36208238 - 36208170
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||| ||||||| |||||| |||||||    
T  36208238 tgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactctta 36208170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 7389457 - 7389386
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| |||||||| |  |||||| |||||||||| ||||||| ||||||||||||||    
T  7389457 acgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactctta 7389386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 45223115 - 45223040
Alignment:
Q  1 tgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||| ||||||||||||||||||||| |||  | | ||||||| |||||||||||||| |||||||||||||||||    
T  45223115 tgattacgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactctt 45223040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 19436219 - 19436289
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| ||||||||  | ||||||  ||||||||||||||||| |||||||||||||    
T  19436219 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 38837285 - 38837215
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||||||||||||  | || |||||| |||||||||| ||||||| |||||||||||||    
T  38837285 acgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 3784063 - 3783998
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 71  Q
    ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| ||||||||    
T  3784063 acgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 35137601 - 35137533
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||| |||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||    
T  35137601 acgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 41915806 - 41915740
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||||||||| || |||||| |||||||||| ||| ||| |||||| |||||    
T  41915806 tgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 46374833 - 46374902
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||||| ||||| || || ||| || |||||||||||||||||| |||||| ||||    
T  46374833 cacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 10343597 - 10343665
Alignment:
Q  8 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||| ||||||||    |||||| |||||||||| ||||||| |||||||||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 38267108 - 38267040
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || ||||||  ||| ||||| ||||||| |||||||||||    
T  38267108 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 22343431 - 22343360
Alignment:
Q  4 tcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |||||    
T  22343431 tcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 35468894 - 35468957
Alignment:
Q  13 agatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||| ||| ||||||||  |||||||| ||| |||||||||||||| |||||||||||||    
T  35468894 agatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 11044236 - 11044186
Alignment:
Q  26 ggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  11044236 ggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 40957775 - 40957705
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| ||| |||| |  |||||| |||||||||  ||||||| |||||||||||||    
T  40957775 acgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 32564461 - 32564526
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| |||||||| || |||||| ||||||||| |||| ||| |||||| ||||    
T  32564461 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 41423747 - 41423682
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||| |||||||  | |||||||||| |||| ||||||||| |||||| ||||    
T  41423747 tgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataactc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 4999546 - 4999614
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||| |||||||||||||| ||||||||  | |||||| ||| |||||| ||||||| |||||||||||    
T  4999546 acgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 21234469 - 21234401
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||| ||||||||||  ||||||| || ||||||  ||||||||||||||||| |||||| ||||    
T  21234469 acgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 35522945 - 35522881
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 69  Q
    |||||||||||||||||||| ||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  35522945 cacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 38044262 - 38044195
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| | |||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  38044262 tgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 46033832 - 46033902
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||| ||| ||||| || || |||||| ||||||||| || ||||| |||||| |||||    
T  46033832 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 3694435 - 3694370
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 71  Q
    ||||||||||||||||||| ||||| ||  | ||||||  ||||||||| ||| ||||||||||||    
T  3694435 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcatta 3694370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 39255954 - 39256023
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||| | ||| ||||  | |||||| |||||||||| ||||||| |||||| ||||    
T  39255954 cacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 40846152 - 40846213
Alignment:
Q  13 agatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||| | |||||| || |||||| |||||||||||||| ||| |||||| ||||    
T  40846152 agatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 50052460 - 50052530
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||||||||||    
T  50052460 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 40574846 - 40574779
Alignment:
Q  7 cgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 50526202 - 50526271
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| |||||||||||    
T  50526202 cacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 29547994 - 29548062
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| |||||| |||||||    
T  29547994 tgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctta 29548062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 48183081 - 48183152
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| |||||||| || |||||| |||| ||||| ||||||| ||||||||||||||    
T  48183081 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactctta 48183152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 480479 - 480549
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| || ||||||  ||||||||| ||||||| |||||||||||||    
T  480479 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 42044399 - 42044469
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||  | ||||||||| |||||||||| ||||||| |||||||||||||    
T  42044399 acgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 6034109 - 6034044
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||    
T  6034109 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8343198 - 8343263
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||| ||| |||||| ||||    
T  8343198 tgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 11511494 - 11511562
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||| ||| |||||||| || |||||| |||||||||| ||||||| |||||||||||    
T  11511494 acgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 55475256 - 55475188
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    |||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||| |||||||    
T  55475256 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactctta 55475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 23608303 - 23608232
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| ||||||||  | ||||||  || |||||| ||||||||||||||||||||||    
T  23608303 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactctta 23608232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 29234277 - 29234346
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||||| |||| |||| || |||||| ||| |||||| ||||||| ||||||||||||    
T  29234277 acgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcattactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 41236415 - 41236347
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| | ||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  41236415 acgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 3481720 - 3481654
Alignment:
Q  8 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||| |||||||| |  |||||| |||||||| | ||||||| |||||||||||    
T  3481720 gtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 24995139 - 24995209
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||| |||||| ||| |||||||| || |||||| ||| |||||| |||| ||||||||||||||||    
T  24995139 acgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 29239954 - 29239884
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||| |||||||||||| | ||||||  | |||||| |||||||||| ||||||| |||||||||||||    
T  29239954 acgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 31910258 - 31910192
Alignment:
Q  8 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||| |||||||| |  ||||||  ||||||||||||||||| |||||| ||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 47986273 - 47986207
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||| | |||||| ||||||||| |||||||||| ||| ||| |||||| |||||    
T  47986273 tgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 50813927 - 50813993
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||| |||||||| || ||||||||||||||||  ||| ||| |||||| |||||    
T  50813927 tgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 47104613 - 47104541
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||| |||||||||| |||||||  |  ||||||  || ||||| |||||||||||||||||||||||    
T  47104613 cacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactctta 47104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 54473565 - 54473633
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||| |||||||||||| ||||||||  | ||||||  ||||||||| ||||||| |||||||||||    
T  54473565 acgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 19670751 - 19670818
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||  ||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  19670751 tgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 29977953 - 29977882
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| ||||| || || |||||| ||||||| || | | ||| ||||||||||||||    
T  29977953 acgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcattactctta 29977882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 53352598 - 53352660
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 69  Q
    ||||||||||||||||||||||||| || | |||||||  ||||||||| ||||||| ||||||    
T  53352598 acgtgtcagatttttgtgtaggtgttaaagaatgtatt-gcacctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 17983778 - 17983823
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 54  Q
    |||||||||||||||| |||||||| || |||||| ||||||||||    
T  17983778 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 17983823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 11095385 - 11095456
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 27714923 - 27714993
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||| | ||||||| |||||||||||||    
T  27714923 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 49607482 - 49607412
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||||    
T  49607482 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 35965805 - 35965877
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    |||||||||||||||| ||| |||||||| |||||||||| ||| ||||||||| ||| ||||||||||||||    
T  35965805 cacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactctta 35965877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 53982079 - 53982011
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||    
T  53982079 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 11347953 - 11348024
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||||||| | |||||| |||||||||  ||||||||||||||||| |||||| ||||||    
T  11347953 cacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 54868927 - 54868998
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||||||||||    
T  54868927 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 8956831 - 8956761
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||| |||||| ||| |||||||| ||||||||| |||| ||||||||||||| ||||||||||||    
T  8956831 cacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 14623874 - 14623939
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||| ||| |||||||| || |||||| |||||||||||||||||| |||||||||||    
T  14623874 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 26141563 - 26141632
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||||| ||||| || || |||||| |||||||||||||||||| |||||| ||||    
T  26141563 cacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 13898086 - 13898154
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 73  Q
    |||||||||||||||| ||| |||||||| || |||||| |||||||||||||| ||| ||||||||||    
T  13898086 cacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 33644268 - 33644200
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| ||||| |||| ||||||| |||||||||||    
T  33644268 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 52629368 - 52629305
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 69  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  52629368 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 20764946 - 20765003
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctat 62  Q
    |||||||||||||||||||| ||||| || |  |||||||||||||||||||||||||    
T  20764946 cacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctat 20765003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 41189795 - 41189868
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttac 78  Q
    ||||||||| |||||| ||| ||||||||  |||||||| |||||||||||||| ||| |||||| ||||||||    
T  41189795 cacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactcttac 41189868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 51419391 - 51419460
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||||| ||||| || |||||||||  || |||||||||||||| |||||| ||||    
T  51419391 cacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 48587123 - 48587187
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 70  Q
    ||||||||||||||| |||||||||||| || |||||| |||||||||| | ||||| |||||||    
T  48587123 acgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 31456757 - 31456690
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 73  Q
    ||||||||||||||||||| |||||||| || |||||| || |||| || ||||||| ||||||||||    
T  31456757 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 24699985 - 24700055
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||| ||||||||| ||| ||||||||  | |||||| ||| |||||||||||||| ||||||||||||    
T  24699985 cacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 35536695 - 35536625
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||| |||||| ||| ||||||||  | |||||| |||| ||||||||||||| ||||||||||||    
T  35536695 cacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 36707456 - 36707526
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| | |||||| || ||||||  ||||||||| | ||||| |||||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 17470473 - 17470404
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| ||||| ||  | |||||| |||||||| | ||||||| ||||||||||||    
T  17470473 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 8076461 - 8076393
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||| |||||||||||| |||||||| || |||| | |||||||||| ||| ||| |||||||||||    
T  8076461 acgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 21746213 - 21746284
Alignment:
Q  6 acgtgtcagatttttgtgtagg--tgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| ||  |||| | | ||||||| |||||||||||||| ||| ||||||||||||    
T  21746213 acgtgtcagatttttgtgtgggggtgtccaggaatgtattgccacctaaggatgtatatgtatcattactct 21746284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39670084 - 39670023
Alignment:
Q  1 tgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctat 62  Q
    ||||||||||||| |||||| | ||| |||||| |||| |||| |||| |||||||||||||    
T  39670084 tgatcacgtgtcaaatttttatatagatgtcaagggatatattgccacataaggatgtctat 39670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 2581983 - 2581913
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||||    
T  2581983 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27564762 - 27564835
Alignment:
Q  1 tgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||| ||||||||||||||||||| ||||||||  | |||||| |||||||||||||||||| |||||||||||    
T  27564762 tgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 51898715 - 51898784
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| ||||||||||||    
T  51898715 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 9474908 - 9474976
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||    
T  9474908 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 47452352 - 47452420
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||| |||||||||||| |||||||| || ||||||||||||||||| ||||||| |||||||||||    
T  47452352 acgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 32813316 - 32813245
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||||||| ||||| || || |||||| |||||||||||||||||| |||||| ||||||    
T  32813316 cacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 32813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 37649267 - 37649198
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||||||| |||||||| |  |||||| |||||||| ||||||||| |||||||||||    
T  37649267 cacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 3000387 - 3000319
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||||||||    
T  3000387 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 38595222 - 38595152
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||| | ||| ||| |||||||||||||    
T  38595222 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 50630526 - 50630457
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||  ||| ||||||||| |||||||||| | ||||| ||||||||||||    
T  50630526 acgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 43200 - 43132
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| |||||||||  | ||||||  ||||||| |||||||||||    
T  43200 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 48716314 - 48716382
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| | ||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  48716314 acgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 23597122 - 23597193
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| ||| ||| |||| |  |||||| |||||||| ||||||||| |||||||||||||    
T  23597122 cacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 49811559 - 49811630
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||||||||| | ||||||  | ||||||  ||||||||||||||||| |||||| |||||||    
T  49811559 acgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactctta 49811630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 7740802 - 7740732
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||| |||||| ||||||||||||||||||||||  ||| ||||| |||| || |||||| |||||    
T  7740802 cacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactct 7740732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 8346420 - 8346490
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||| | || |||| |||||||||||||    
T  8346420 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactctt 8346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 38632353 - 38632423
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| | ||| ||  | |||||| |||||||||| ||||||| |||||||||||||    
T  38632353 acgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3302560 - 3302633
Alignment:
Q  1 tgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||| ||||||||||||||||||| |||||| | | || ||||  ||||||||||||| ||| |||||||||||    
T  3302560 tgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattactc 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 41608528 - 41608593
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||  ||||||| || |||||| |||||||||||||| ||| |||||| ||||    
T  41608528 tgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 44548408 - 44548473
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 71  Q
    ||||||||||||||||||| ||| ||||  | |||||| |||||||| ||||||||| ||||||||    
T  44548408 acgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 50591035 - 50591100
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||    
T  50591035 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 26440803 - 26440741
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatc 67  Q
    |||||||||||||||||||| ||||| || || ||||||  || |||||||||||||| ||||    
T  26440803 cacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatc 26440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 37926469 - 37926539
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||| ||| ||||| ||  |||||||| |||||||| ||| ||||| |||||| |||||    
T  37926469 cacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 26274498 - 26274429
Alignment:
Q  8 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    ||||||||||||| ||| | ||||||  |||||||| |||| ||||| ||||||| |||||||| |||||    
T  26274498 gtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcattattctta 26274429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 41758873 - 41758804
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| | |||||| || |||||| |||  ||| | ||||||| ||||||||||||    
T  41758873 acgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactct 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 17598622 - 17598554
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| |||||||||||    
T  17598622 acgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 23128159 - 23128229
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||| |||||||| |||||||||| ||| ||| | |||||||||||||||| ||||    
T  23128159 acgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcattattctt 23128229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 946442 - 946377
Alignment:
Q  8 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 73  Q
    |||||||||||||| ||||||||||| || ||||||| ||||||||||||||||| |||| |||||    
T  946442 gtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgttact 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 31953065 - 31953130
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||| ||| |||||||| || |||||| |||||||||||||||||| |||||||||||    
T  31953065 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 11427686 - 11427615
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccaccta--aggatgtctatatatcattactct 75  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||  ||| ||||||| ||||||||||||    
T  11427686 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactct 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 32869746 - 32869678
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||| ||||||    
T  32869746 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 12732551 - 12732480
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||||||| ||||||||||  | |||| |||| |||| |||||||| |||||||||||||    
T  12732551 cacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactctt 12732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 28536519 - 28536582
Alignment:
Q  7 cgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 70  Q
    |||||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||||    
T  28536519 cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 31976317 - 31976247
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    |||||||||||||||||||| ||||| || || | |||| |||||||||||||||||| |||||| |||||    
T  31976317 cacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactct 31976247  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 15990077 - 15990145
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 77  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |||||||    
T  15990077 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctta 15990145  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 31109432 - 31109500
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| | |||||| || |||||| |||||||||| |||||||  ||||||||||    
T  31109432 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 30341395 - 30341462
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  30341395 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 30341462  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 31110793 - 31110861
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||||||   ||||||| || |||||| |||||||||||||||||| |||||| ||||||    
T  31110793 acgtgtcagatttttgtga--gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 15508059 - 15508124
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||    
T  15508059 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 9379743 - 9379807
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 69  Q
    ||||||||| |||||||| | |||||||| |||||||||  || |||||||||||||| ||||||    
T  9379743 cacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 6209497 - 6209567
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||| |||||||||||||  |||||||    |||||| |||||||||| ||||||| |||||||||||||    
T  6209497 acgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctt 6209567  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 15832645 - 15832575
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    |||||||| |||||||||| ||||||||  ||| ||||  ||||||| | ||||||| |||||||||||||    
T  15832645 acgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactctt 15832575  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 22422053 - 22422119
Alignment:
Q  9 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 75  Q
    ||||||| |||||| |  |||||||  ||| |||| |||||||||||||||||| ||||||||||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactct 22422119  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 4231617 - 4231564
Alignment:
Q  5 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgt 58  Q
    |||||||||||||||||||| |||| ||| || |||||| |||||||| |||||    
T  4231617 cacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgt 4231564  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 29857895 - 29857827
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||| ||  | |||||| ||| |||| | ||||||| |||||||||||    
T  29857895 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

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Target: scaffold0321 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 10141 - 10211
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 76  Q
    ||||||||||||||| ||| | |||||| ||||||||| |||||||| | ||||||| |||||| ||||||    
T  10141 acgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactctt 10211  T

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Target: scaffold1268 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 961 - 1029
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||| ||||||||| | ||| || || |||||| |||||||| ||||||||| |||||||||||    
T  961 acgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

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Target: scaffold1267 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 961 - 1029
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||| ||||||||| | ||| || || |||||| |||||||| ||||||||| |||||||||||    
T  961 acgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 4097 - 4029
Alignment:
Q  6 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 74  Q
    ||||||||||||||||||| ||||| ||  | |||||| ||| |||| | ||||||| |||||||||||    
T  4097 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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