View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_low_21 (Length: 214)
Name: NF3793_low_21
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 55374831 - 55374652
Alignment:
| Q |
17 |
aatatatacttatgtaagttgataagttttcataaacgaattaaagttaatctaaactaggctccattgtaacttctagcataattgacaaatttgttaa |
116 |
Q |
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| T |
55374831 |
aatatatacttatgtaagttgataagttttcataaacgaattaaagttaatctaaattaggctccattgtaacttctagcataattgacaaattagttaa |
55374732 |
T |
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| Q |
117 |
atatttagaactaaattctaattttacttagcttttgacttaaatataagttattatattgaatccaagcatgacaattt |
196 |
Q |
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| T |
55374731 |
atatttaaaactaaattctaattttacttagcttttgacttaaatataagttattatattgaatccaagcatgagaattt |
55374652 |
T |
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