View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3793_low_22 (Length: 204)
Name: NF3793_low_22
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 20477401 - 20477475
Alignment:
| Q |
45 |
tcagggatgaacaaacttggtgaatttttggacgtcaatcgtaaagtagggttccagaattgaacccaacattct |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
20477401 |
tcagggatgatcaaacttggtgaatttttggacgtcaatcgtaaagtagggttccagaataaaacccaaaattct |
20477475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 20477490 - 20477524
Alignment:
| Q |
152 |
aatcatacaaaccaggccgttggcagagccaattg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
20477490 |
aatcatacaaaccaggccgttggcagagccaattg |
20477524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University