View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3793_low_5 (Length: 422)

Name: NF3793_low_5
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3793_low_5
NF3793_low_5
[»] chr2 (2 HSPs)
chr2 (8-408)||(16658461-16658861)
chr2 (119-214)||(12246464-12246559)
[»] chr1 (5 HSPs)
chr1 (22-250)||(4679506-4679737)
chr1 (8-271)||(29214530-29214798)
chr1 (8-262)||(29464821-29465079)
chr1 (92-216)||(52549957-52550084)
chr1 (154-280)||(15593987-15594116)
[»] chr7 (11 HSPs)
chr7 (13-383)||(13334311-13334689)
chr7 (13-328)||(10495317-10495635)
chr7 (8-328)||(8666323-8666646)
chr7 (8-195)||(1300495-1300685)
chr7 (8-250)||(8658345-8658590)
chr7 (20-328)||(8672022-8672333)
chr7 (43-185)||(3146314-3146459)
chr7 (20-252)||(8653421-8653662)
chr7 (43-235)||(8615712-8615907)
chr7 (20-192)||(8653229-8653404)
chr7 (43-250)||(8586682-8586892)
[»] chr4 (1 HSPs)
chr4 (20-268)||(9336844-9337095)
[»] chr6 (1 HSPs)
chr6 (44-147)||(28910462-28910568)
[»] scaffold0248 (1 HSPs)
scaffold0248 (306-357)||(17727-17779)


Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 16658461 - 16658861
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaag 107  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658461 gagagataccacgtggaagataagaaatttttacaaaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaag 16658560  T
Q  108 atgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16658561 atgtgaatttaaagctctcctctcaagaaattgagaagatcaacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaac 16658660  T
Q  208 agatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttctttattaaatctcaagtga 307  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16658661 agatgttcttgagtttcatctgaaggagatggagagcatgttgaagtacgttatagccaagactggctagttttatttttctttattaaatctcaagtga 16658760  T
Q  308 tgtcttgcttttgtaagtgctcaaacctttaggttgattgtcattatctagtagtattcaagttgatgatgatgttgggattgaacctgttacttaaact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658761 tgtcttgcttttgtaagtgctcaaacctttaggttgattgtcattatctagtagtattcaagttgatgatgatgttgggattgaacctgttacttaaact 16658860  T
Q  408 g 408  Q
    |    
T  16658861 g 16658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 12246464 - 12246559
Alignment:
Q  119 aagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgtt 214  Q
    |||||||| || |||||||| ||||||||| |   ||||||| |||||||||||| |||||||||| |||| ||| | ||   |||||||||||||    
T  12246464 aagctctcttcacaagaaatcgagaagatcgaatctgcaattgctgtggccacaaatttgcttgatgagaaaaaccagcaggttgaaatagatgtt 12246559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4679506 - 4679737
Alignment:
Q  22 ggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gatgtgaattta 118  Q
    |||||||||||||||||||  |||||| |||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||    ||||| ||||||    
T  4679506 ggaagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaattta 4679605  T
Q  119 aagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttctcg 218  Q
    |||||||| | | | |||| ||| |||||| || |||||||||| |||||||| |  |||||||||||||||||| |||| || |||||||||||||| |    
T  4679606 aagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataacgaacagaaagaaatagatgttcttg 4679705  T
Q  219 agtttcatctgaaggagatggagagcatgttg 250  Q
    ||  ||||||||||||| ||||||||||||||    
T  4679706 aggatcatctgaaggagttggagagcatgttg 4679737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 29214530 - 29214798
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaag 107  Q
    |||| |||||| |||||||||| | |||| |||  |||||||||||||| || |||||| |||| |||||||||||||||||| ||| ||||||||||||    
T  29214530 gagaaataccatgtggaagatatgcaattcttaaggaaggccaaggtaacgagtgcattagattcttgtgtttacaatatgaaaaatactttaaagaaag 29214629  T
Q  108 a----tgtgaatttaaagctct-cctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaat 202  Q
    |    ||| ||||| ||||||| || ||||||||| |||||||||| |||||| ||||||| | |     | |||||||||||||||||||||| | ||     
T  29214630 acggttgttaatttgaagctctccccctcaagaaagtgagaagatcaacaatgtaattactatcgttgtgaatttgcttgataagaataacaaagagaaa 29214729  T
Q  203 gaaatagatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagact 271  Q
     |||||||||||||  ||  ||||||  ||||| |||||||||||| ||| ||| ||||| ||||||||    
T  29214730 taaatagatgttctttagggtcatctcgaggagctggagagcatgtcgaaacaccttatatccaagact 29214798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 29465079 - 29464821
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttta---aaga 104  Q
    |||| |||||| |||||||||| | ||||  ||  ||||||||| ||||||| |||||| |||| |||||||||||||||||||||| | |||   ||||    
T  29465079 gagaaataccatgtggaagatatgcaattcgtaaggaaggccaatgtaatgagtgcattagattcttgtgtttacaatatgaagaatacattaaagaaga 29464980  T
Q  105 aagatgtgaatttaaagctc-tcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatg 203  Q
    | | ||| ||||| | |||| |||  |||||||| |||||||||| ||||||||||||||||  |    | |||||||||||||||||||||| | || |    
T  29464979 aggttgttaatttgatgctcttcccatcaagaaagtgagaagatcaacaatgcaattactgtctctgtgaatttgcttgataagaataacaaaaagaaag 29464880  T
Q  204 aaatagatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttata 262  Q
    ||| ||||||||| |||  ||||||| ||||| |||||||||||| ||| ||| |||||    
T  29464879 aaacagatgttcttgagggtcatctggaggagctggagagcatgtcgaaacaccttata 29464821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 52549957 - 52550084
Alignment:
Q  92 aatgctttaaagaaagatg---tgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataaga 188  Q
    ||||||||||||||||| |   | ||||| |||||||||||  ||||||||||||||||| |   ||||||| | |||||||| | |||| ||||| |||    
T  52549957 aatgctttaaagaaagaggatattaatttgaagctctcctcagaagaaattgagaagatcgaatctgcaattgcagtggccacgaatttggttgatcaga 52550056  T
Q  189 ataacaaacaaaatgaaatagatgttct 216  Q
    | ||| | |||  |||||||||||||||    
T  52550057 aaaaccagcaagttgaaatagatgttct 52550084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 15594116 - 15593987
Alignment:
Q  154 tgcaattactgtggccacaagtttgcttgata---agaataacaaacaaaatgaaatagatgttctcgagtttcatctgaaggagatggagagcatgttg 250  Q
    ||||||||| ||||| |||| |||||||||||   |||||||| | || |||||| |||||||||| |||  | || |||||||| | |||||||||||     
T  15594116 tgcaattacagtggctacaaatttgcttgataagaagaataaccagcataatgaagtagatgttcttgagggtaatttgaaggagctcgagagcatgttc 15594017  T
Q  251 aagcacgttatagccaagactggctagttt 280  Q
     |  || || ||| ||||||||||||||||    
T  15594016 gaaaaccttgtagtcaagactggctagttt 15593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 13334311 - 13334689
Alignment:
Q  13 ataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaa---agat 109  Q
    |||||| || |||||||||||||| |||  |||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||   |||     
T  13334311 ataccatgtcgaagataagaaattcttaaggaaggccaaggtaatgaatgcattagattcttgtgtttacaatatgaagaacactttaaagaagaaagac 13334410  T
Q  110 gtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatag 209  Q
    || ||| | |  |||||| ||||||||||| ||||||||  ||||||||||||| | || |  | |||||||||||||||||| ||| | || |||||||    
T  13334411 gttaatctcatcctctcccctcaagaaattaagaagatcagcaatgcaattacttttgctatgaatttgcttgataagaataataaagagaaagaaatag 13334510  T
Q  210 atgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttct-ttattaaatctcaagtgat 308  Q
    ||||||| |||  ||||||  ||||| |||||||||||| ||| ||| | ||| | ||||||   || ||| |||||||| | || | || | |||||||    
T  13334511 atgttcttgagggtcatctcgaggagctggagagcatgtcgaaacacctgatatcaaagact-aataattttatttttctgtgataagatttgaagtgat 13334609  T
Q  309 gtcttgcttttgtaagtgct-----caaacctttaggttgattgtcattatctagtagtattcaagttgatgatgatgtt 383  Q
    |||||||||||| |||||||     ||||| ||||| || ||| |||||||||| ||| ||| ||||| ||||| |||||    
T  13334610 gtcttgcttttgaaagtgctgaatgcaaacttttagttttattatcattatctaatagcattgaagtttatgataatgtt 13334689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 10495317 - 10495635
Alignment:
Q  13 ataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gat 109  Q
    |||||| || ||||||| |||||| |||  ||||||||||||||||| |||||| |||| |||||||||||||||||||||  ||||||||||    ||     
T  10495317 ataccatgtcgaagatatgaaattcttaaggaaggccaaggtaatgagtgcattagattcttgtgtttacaatatgaagaacactttaaagaagaaggac 10495416  T
Q  110 gtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatag 209  Q
    || ||| | |  |||||| ||||||||||||||||||||  ||||||||||||| | || |  | |||||||||||||| ||| ||| | ||  ||||||    
T  10495417 gttaatctcatcctctccgctcaagaaattgagaagatcagcaatgcaattacttttgctatgaatttgcttgataagagtaataaagagaaaaaaatag 10495516  T
Q  210 atgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttcttt-attaaatctcaagtgat 308  Q
    ||||||| |||  ||||||| ||||| |||||||||||| ||| ||| ||||| ||||||||   || ||| |||||||||| || | || | ||||||     
T  10495517 atgttcttgagaatcatctggaggagctggagagcatgtcgaaacaccttatatccaagact-aataattttatttttctttgataagatttaaagtgaa 10495615  T
Q  309 gtcttgcttttgtaagtgct 328  Q
    |||||||||||| |||||||    
T  10495616 gtcttgcttttgaaagtgct 10495635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 8666646 - 8666323
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa- 106  Q
    |||| |||||| |||||||||| | ||||||||   | |||||||||||||  || ||| |||| ||||||||||||||||||||| |||||||||||      
T  8666646 gagaaataccatgtggaagatatgcaatttttaagaagggccaaggtaatgtgtgaattagattcttgtgtttacaatatgaagaaggctttaaagaaga 8666547  T
Q  107 --gatgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatga 204  Q
      ||||| ||| | |  |||||| ||||||||||||  |||||| |||||||||||||||| || |    |||||||||||||||||| ||| | || ||    
T  8666546 aggatgttaatctgattctctcccctcaagaaattgcaaagatcaacaatgcaattactgttgctatggatttgcttgataagaataaaaaagagaaaga 8666447  T
Q  205 aatagatgttctcgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttctt-tattaaatctcaa 303  Q
    |||||||||||| |||  | ||||| ||||| ||||||| |||| ||| ||| ||||| ||||| ||   || ||| |||||||||  || | || | ||    
T  8666446 aatagatgttcttgagggttatctggaggagctggagagaatgtcgaaacaccttatatccaaggct-aataattttatttttcttggataagattttaa 8666348  T
Q  304 gtgatgtcttgcttttgtaagtgct 328  Q
    ||||||||||||||||| |||||||    
T  8666347 gtgatgtcttgcttttgaaagtgct 8666323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 1300685 - 1300495
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttta---aaga 104  Q
    |||| ||||||| ||||||||||||| ||||||  ||||||||  ||||||||||  ||||||||||||||||||||  |||||||||| |||   ||||    
T  1300685 gagaaataccacatggaagataagaagtttttaaagaaggccacagtaatgaatgatttggattattgtgtttacaaagtgaagaatgccttaaagaaga 1300586  T
Q  105 aagatgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaa 195  Q
    | ||||| |||||||| ||||||  | ||||||  || |||||| ||||||||||||| ||  | ||||| ||||||||||||||||||||    
T  1300585 aggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaacaatgcaattaccgtcacaacaagcttgcttgataagaataacaa 1300495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 8658590 - 8658345
Alignment:
Q  8 gagagataccacgtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttt---aaaga 104  Q
    ||||||||||   ||||||||||| ||||||||  ||||||||| ||||||||||  ||||||||||||||||||||  |||||||||| ||   |||||    
T  8658590 gagagataccgtatggaagataaggaatttttaaggaaggccaaagtaatgaatgatttggattattgtgtttacaaagtgaagaatgcgttaaaaaaga 8658491  T
Q  105 aagatgtgaatttaaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatga 204  Q
    | ||||| |||||||| ||||||  |  |||||  || |||||| ||||||||| |||  |||| ||||  |||||| || |||||||||||||  |  |    
T  8658490 aggatgttaatttaaacctctcccgtggagaaagggaaaagatcaacaatgcaactaccttggcaacaaacttgcttcatgagaataacaaacagcagaa 8658391  T
Q  205 aatagatgttctcgagtttcatctgaaggagatggagagcatgttg 250  Q
    |||||||||| | |||  ||||||||||||| |||| | |||||||    
T  8658390 aatagatgttgttgaggatcatctgaaggagctggaaatcatgttg 8658345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 8672022 - 8672333
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgcttta---aagaaagatgtgaatt 116  Q
    |||||||||| | ||||||||   | |||||||||||||  |||||| |||| ||||||||||||||||||||| ||||||   |||||  |||| |||     
T  8672022 gtggaagatatgcaatttttaagaagggccaaggtaatgtgtgcattagattcttgtgtttacaatatgaagaacgctttagagaagaacaatgttaatc 8672121  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttct 216  Q
    | |  |||||| ||||||||||||  |||||| |||||||||||||||| || |    ||||||||||| |||||| ||| | || ||||||||||||||    
T  8672122 tgattctctcccctcaagaaattgcaaagatcaacaatgcaattactgttgctatggatttgcttgatatgaataaaaaagagaaagaaatagatgttct 8672221  T
Q  217 cgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaagactggctagtttgatttttctt-tattaaatctcaagtgatgtcttgc 315  Q
     |||  | ||||| ||||| ||||||| |||| ||| ||| ||||| ||||| ||   || ||| |||||||||  || | || | ||||||||||||||    
T  8672222 tgagggttatctggaggagctggagagaatgtcgaaacaccttatatccaaggct-aataattttatttttcttggataagattttaagtgatgtcttgc 8672320  T
Q  316 ttttgtaagtgct 328  Q
    ||||| |||||||    
T  8672321 ttttgaaagtgct 8672333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 3146459 - 3146314
Alignment:
Q  43 gaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaa---agaaagatgtgaatttaaagctctcctctcaagaaatt 139  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||   |||| ||||||||| |||| |||||||||||||||| |    
T  3146459 gaaggccaatgtaatgaatgcattagattattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtgaatataaatctctcctctcaagaaaat 3146360  T
Q  140 gagaagatctacaatgcaattactgtggccacaagtttgcttgata 185  Q
    || |||||| |   |||||| ||   |||||||||||| |||||||    
T  3146359 gacaagatcaattctgcaatcacaaaggccacaagtttacttgata 3146314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 8653662 - 8653421
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaa---gaaagatgtgaatt 116  Q
    |||||||||| |||||||||   ||||||||| ||||| |  |||||||||| ||||||||||||||| |||| |||||| ||   ||| |||||  ||     
T  8653662 gtggaagatatgaaatttttgaggaaggccaaagtaataagcgcattggattcttgtgtttacaatataaagagtgctttgaatatgaaggatgttgatc 8653563  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttg------ataagaataacaaacaaaatgaaataga 210  Q
    |||  |||||| ||||||||| |||| ||||| |||||||||||| ||| ||||  | |||||| |      ||||||||||| |||| |  ||||||||    
T  8653562 taatcctctcccctcaagaaagtgagcagatcaacaatgcaattattgttgccatgaatttgctcgaaatgaataagaataaccaacatatagaaataga 8653463  T
Q  211 tgttctcgagtttcatctgaaggagatggagagcatgttgaa 252  Q
    |||||| |||  |||||| ||||||||| | |||||||||||    
T  8653462 tgttcttgagcatcatcttaaggagatgaacagcatgttgaa 8653421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 8615907 - 8615712
Alignment:
Q  43 gaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gatgtgaatttaaagctctcctctcaagaaatt 139  Q
    |||||||||||||||||||| ||| ||| | ||  |||||||  ||| ||||||| |||||||    |||||   ||||||||| || |||||| || ||    
T  8615907 gaaggccaaggtaatgaatgaattagatgactgcatttacaagttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaaagtt 8615808  T
Q  140 gagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttctcgagtttcatctgaaggag 235  Q
    || || ||| ||||||||||||||||||| |||| ||||||||||| ||||||| | || | |||| |||| ||||||||   |||||||||||||    
T  8615807 gaaaatatcaacaatgcaattactgtggctacaaatttgcttgataggaataaccagcagagtgaagtagaagttctcgaagatcatctgaaggag 8615712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 8653404 - 8653229
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaa---gaaagatgtgaatt 116  Q
    |||||||||| ||||||||||  |||||||| |||||||| ||||||||||| ||| ||| | ||||| | ||||||||| ||   ||| ||||| |||     
T  8653404 gtggaagatatgaaatttttaaggaaggccacggtaatgagtgcattggattcttgcgttaagaatataacgaatgctttgaatacgaaggatgttaatc 8653305  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataa 192  Q
    |||   ||||| ||||||||| ||| |||||| |||||||||||  || |||||  | ||||||||||||||||||    
T  8653304 taatcatctcccctcaagaaagtgaaaagatcaacaatgcaatttttggggccatgaatttgcttgataagaataa 8653229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 8586682 - 8586892
Alignment:
Q  43 gaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gatgtgaatttaaagctctcctctcaagaaatt 139  Q
    |||||| |||||||||||| |||| ||| |||||||||||||  | | ||||||| |||||||    ||| | ||  |||||  ||| |||||| || ||    
T  8586682 gaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttctcaaaaagtt 8586781  T
Q  140 gagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttctcgagtttcatctgaaggagatgg 239  Q
     | |||||| |  ||||||||||  |||| |||| ||||||||||||||||||| |  | ||||| ||||||||||| | |  ||||||||||||| | |    
T  8586782 aaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttg 8586881  T
Q  240 agagcatgttg 250  Q
    |||||||||||    
T  8586882 agagcatgttg 8586892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 9336844 - 9337095
Alignment:
Q  20 gtggaagataagaaatttttactgaaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaaga---tgtgaatt 116  Q
    |||||||||| | ||||||||   | |||||||||||||  |||||| |||| ||||||||||||||||||||| |||||||||||  |   ||| |||     
T  9336844 gtggaagatatgcaatttttaagaagggccaaggtaatgtgtgcattagattcttgtgtttacaatatgaagaacgctttaaagaagaacaatgttaatc 9336943  T
Q  117 taaagctctcctctcaagaaattgagaagatctacaatgcaattactgtggccacaagtttgcttgataagaataacaaacaaaatgaaatagatgttct 216  Q
    | |  ||| |  |||||||||||||||||||| |||||||||||||||| || |  | |||||||||||||||||||||| | || ||||||||||||||    
T  9336944 tgattctcacgcctcaagaaattgagaagatcaacaatgcaattactgttgctatgaatttgcttgataagaataacaaagagaaagaaatagatgttct 9337043  T
Q  217 cgagtttcatctgaaggagatggagagcatgttgaagcacgttatagccaag 268  Q
     |||  ||||||| ||||  | |||||||||| ||||||| ||||| |||||    
T  9337044 tgagggtcatctggaggatctagagagcatgtcgaagcaccttatatccaag 9337095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 28910568 - 28910462
Alignment:
Q  44 aaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaa---gaaagatgtgaatttaaagctctcctctcaagaaattg 140  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||||||| ||||||   ||| |||   ||| ||||||||||||||||||||| ||    
T  28910568 aaggccaatgtaatgaatgcattacattattgtgtttacaagatgaagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaatg 28910469  T
Q  141 agaagat 147  Q
    | |||||    
T  28910468 acaagat 28910462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 17727 - 17779
Alignment:
Q  306 gatgtcttgctttt-gtaagtgctcaaacctttaggttgattgtcattatcta 357  Q
    |||||||||||||| | ||||||||||| ||||||||| ||| ||||||||||    
T  17727 gatgtcttgcttttagcaagtgctcaaatctttaggttaattatcattatcta 17779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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