View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_low_6 (Length: 413)
Name: NF3793_low_6
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_6 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 23 - 397
Target Start/End: Original strand, 4202962 - 4203336
Alignment:
| Q |
23 |
gcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcc |
122 |
Q |
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| T |
4202962 |
gcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcc |
4203061 |
T |
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| Q |
123 |
tacatcttctaaacacacaatctttcttagccctattaccacaatcttgacaaactctatactcagaaccatacacaccattttcttcactctccatcat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4203062 |
tacatcttctaaacacacaatctttcttagccctattaccacaatcttgacacactctatactcagaaccatacacaccattttcttcactctccatcat |
4203161 |
T |
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| Q |
223 |
agcaatttttccatgattctcttcttcattgatcactccnnnnnnnggaagattcactacttcaggacacatcctaaggttccaaaaattgttattgtta |
322 |
Q |
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| T |
4203162 |
agcaatttttccatgattctcttcttcagtgatcactcctttttttggaagattcactacttcaggacacatcctaagattccaaaaattgttattgtta |
4203261 |
T |
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| Q |
323 |
ctaggattttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaa |
397 |
Q |
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| T |
4203262 |
ctaggattttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaa |
4203336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 16960 - 17082
Alignment:
| Q |
65 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
164 |
Q |
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| T |
16960 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
17059 |
T |
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| Q |
165 |
aatcttgacaaactctatactca |
187 |
Q |
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| T |
17060 |
aatcttgacaaaccctaaactca |
17082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 14512853 - 14512731
Alignment:
| Q |
65 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
164 |
Q |
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||||| || ||||||| ||||||||||||||| | ||||| || ||||||||||||||||||||| || | ||||||||||||||| ||||| |||| |
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| T |
14512853 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
14512754 |
T |
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| Q |
165 |
aatcttgacaaactctatactca |
187 |
Q |
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||||||||||||| ||| ||||| |
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| T |
14512753 |
aatcttgacaaaccctaaactca |
14512731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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