View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3793_low_7 (Length: 412)
Name: NF3793_low_7
Description: NF3793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3793_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 41968375 - 41967980
Alignment:
| Q |
15 |
gaaggaagtcttaaaccagaaggtattgatttaattaaggatatagcttcactcataaataaattttacaaaagatattgttgatataaaatctataatn |
114 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968375 |
gaaggaagtcttaaaccagaaggtattgatttaatgaaggatatagcttcactcataaataaattttacaaaagatattgttgatataaaatctataata |
41968276 |
T |
|
| Q |
115 |
nnnnnnntctttctttactttttatttattgttaaaatttgatgttacaacattcattcactaaaatgatgtactaa--aat-----------gaaattg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
41968275 |
aaaaaaatctttctttactttttatttattgttaaaatttgatgttacaacattcattcactaaaatgatgtactaactaatattgcatggttgaaattg |
41968176 |
T |
|
| Q |
202 |
tagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacaaaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgcttgtgtgt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41968175 |
tagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacaaaaaaccatgtttgttctattgcaagtattgttgtgccaaatgcttgtgtgt |
41968076 |
T |
|
| Q |
302 |
acctccaggaacttatggaaacaaggaagtttgtccgtgctataacgattggaagaccaaagaaggaggaccaaaatgtccttgaattatgttttt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968075 |
acctccaggaacttatggaaacaaggaagtttgtccgtgctataacgattggaagaccaaagaaggaggaccaaaatgtccttgaattatgttttt |
41967980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 16100168 - 16100246
Alignment:
| Q |
266 |
ctattgcaagtattgttgtgcaaaatgcttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctat |
344 |
Q |
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| T |
16100168 |
ctattgcaactactgttgtgcaaaatgtttgtgtgtcccatcaggaacatatggtcacaaggaagaatgtccatgctat |
16100246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 16047017 - 16047081
Alignment:
| Q |
266 |
ctattgcaagtattgttgtgcaaaatgcttgtgtgtacctccaggaacttatggaaacaaggaag |
330 |
Q |
| |
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||||||||| || |||||||||||||| |||||||| || ||||||| ||||| ||||||||| |
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| T |
16047017 |
ctattgcaactactgttgtgcaaaatgtttgtgtgtcccatcaggaacatatggtcacaaggaag |
16047081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 194 - 397
Target Start/End: Complemental strand, 1235191 - 1234988
Alignment:
| Q |
194 |
tgaaattgtagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacaaaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgc |
293 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1235191 |
tgaaattgtagaatgtgctcctcgatgtgaagatagatgctcaaaaacacatcacagaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgc |
1235092 |
T |
|
| Q |
294 |
ttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctataacgattggaagaccaaagaaggaggaccaaaatgtccttgaattatgt |
393 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1235091 |
ttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctataacgactggaagactaaagaaggaggaccaaaatgtccttgaattatgt |
1234992 |
T |
|
| Q |
394 |
tttt |
397 |
Q |
| |
|
|||| |
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|
| T |
1234991 |
tttt |
1234988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 1235409 - 1235334
Alignment:
| Q |
15 |
gaaggaagtcttaaaccagaaggtattgatttaattaaggatatagcttcactcataaataaattttacaaaagat |
90 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1235409 |
gaaggaagtcttaaaccagaaggtattgatttaatgaaggatatagcttcactcataaataaattttacaaaagat |
1235334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 1235278 - 1235232
Alignment:
| Q |
126 |
tctttactttttatttattgttaaaatttgatgttacaacattcatt |
172 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
1235278 |
tctttattttttgtttattgttaaaatttgatgttacaacattcatt |
1235232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 368
Target Start/End: Original strand, 35408853 - 35408976
Alignment:
| Q |
245 |
tcacaaaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgcttgtgtgtacctccaggaacttatggaaacaaggaagtttgtccgtgctat |
344 |
Q |
| |
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|||||| || || |||||||||| ||||| | |||||||||||||| |||||||| || | ||||||||||| ||||| ||| |||||||||||| |
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| T |
35408853 |
tcacaagaagccgtgtttgttcttctgcaaaaagtgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtccgtgctat |
35408952 |
T |
|
| Q |
345 |
aacgattggaagaccaaagaagga |
368 |
Q |
| |
|
||| | ||||| || || |||||| |
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| T |
35408953 |
aacaactggaaaactaaggaagga |
35408976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 384
Target Start/End: Complemental strand, 35649673 - 35649515
Alignment:
| Q |
226 |
atagatgctcaaaaacacatcacaaaaaaccatgtttgttctattgcaagtattgttgtgcaaaatgcttgtgtgtacctccaggaacttatggaaacaa |
325 |
Q |
| |
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||||||||||||| ||||| |||| || ||||| || |||| |||||| | |||||||| || || |||||||| ||||| || |||||| ||||| |
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| T |
35649673 |
atagatgctcaaacacacaatacaagaagccatgcttattcttttgcaacaagtgttgtgccaagtgtttgtgtgtgcctcctggctattatggcaacaa |
35649574 |
T |
|
| Q |
326 |
ggaagtttgtccgtgctataacgattggaagaccaaagaaggaggaccaaaatgtcctt |
384 |
Q |
| |
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| | ||||| || ||||| ||| | |||||||||||| |||||||| ||||| |||| |
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| T |
35649573 |
gcaggtttgcccttgctacaacaactggaagaccaaaaggggaggacccaaatgccctt |
35649515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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